Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07004 ATGAATTCACAACCTAACAACCATACTACAGAATCTAAGGATGTTGGTAGTTCGAGTTCTAATTCGAGCGGAAATAATAACTTACCTCAGAAAAAGATTTTGTCTGACTCGAAGTTTCAACATACGACAGAGCCATCGGGTGCCTTAAACCAAGTCAGACATAGGTTTCCAGATGTATTTCAACAAAAAGGTGGAAGCTATGCAGATCTTCCTGCTGCTAAAATTTCCGAGCTAATGAAATCATCAAGTTTGGATAATGCTCCTACTCAATCACTTTTGAGTGTTGTGAATGGTATCCTAGAAGAAAGTGTCGAAAGAAGAAATGGAGAAATACCACCTCGTGTGGCTTGCTTGTTAAGAAAAGTTGTTCAAGAGATCGAGCGGAGAATATCGACACAACAAGGACATTTAAGAACTCAAAACAATCTTTTTAAAACTCGCGAAGAAAAATATCAATCAAGAATAAGAGTACTTGAAGCTCTAGCATCAGGAACCAATGAGGAGAATATCATAAAGGAAGAAAAAAGTGCACATGACTCAAAGCCAATTGAGAAGATTGTAATAGAAGAAAAGAAGACAAAAGATATAAATCATGTTGAAAAGACTAAAGAGGATGAAAAAAAGAAAGAAATTGATAGGGAAGTTATTAGATTAATGAAAGAAGTGGAAGACAAAAATATGGAAAAGAAGGAGATTGATAAAGAAGTTAAGAGATTGATCAAAGAGGTTGAAGAAAAAAATATGGAAAAGAAGGAGATTGATAAAGAAGTTAAGAGATTGATCAAAGAGGTTGAAGAAAAAAATATGGAAATTTCAACATTCAAGCAAGAACTAGAAAAAATGAAAAAAAGATACGAAGTACAATGTACAAAGATCGAAAATATAGAAAGGAAGGATATTGATAAAGAAGTGGAAGGAAAAAATATGGAAAAGAGGGAAGTTGATGAAGAAATTATGAGATTGAAGAAAGAGGTCGAAGAAAAAAGTATGGAAAAGAAGGAAATTGATAAAGAAGTTATGAGATTGAAGAAAGAGGTGGAAGAAAAAAATGTGGAAATTTCGACGATGAAGCAAGAACTTGAAACAATGAAAAATAGATATGAAGAACAATGTTCAAAGTTGAAATCGGAAGCCGAGGATGTTGAATTAGAATTGAAACAGAAATCGCGAGAACATGAGGCTATAATGGAAAAGTTAAGAAATAAGGTTAGAGAGAGTGAAGCTATTATGGAGTCAAAATATCAGAAGTGGAACATGAAACAAAACATAATACAGAAAGCTGTCAGTTTTCAATTCAGTTCCATACAGAAATTGAAATTGTCTTGGGAATCTATCAAGCAAGATGTTGTGAAAGAGAGAATGATTTACAAAGAGGAATGCAATCGACTAGGTGTGAATCTTAAACCACTAGTGCATGCAGCTGAGAATTATCAAACAGTTCTTGCTGAAAATAGAAAATTATTCAATGAACTTCAAGAATTAAAAGGAAATATTAGAGTATATTGTAGAATTAGACCCTTTATTCCTGGACAAAAAGAAAAACAATCTATTGTTGAGCGCATTGGCGAATCAGATTTGGTTGTAGCAAATCCATCCAAACAAGGGAAAGAAGCACTTAAAACATTTAAGTTTAACAAGATCTTTGGTCCTACCTCAACTCAAGCTGAGGTGTACGATGATATACAAGACTTTATAAGATCAGTACTTGATGGTTTTAATGTGTGCATATTTGCTTATGGACAGACAGGTTCAGGAAAAACTTATACAATGAGTGGCCCAAATGGTGCAACTAATGAGAGTCTTGGTGTTAACTATCGAGCTCTAAATGACCTCTTCAACATATCCTCAAGTAGACAAAGTTCCATAGTTTATGACATTGGAGTTCAAATAATTGAGATCTATAATGAACAAGTTCGCGATTTGCTAACAACCGATATATCTGTCAAAAAATTTGGGATATTGAATCACTCTCAACCAAATGGTTTAGCAGTACCTGATGCTAGCATGCACCCTGTCAAATCAACTGCCGATGTCATAAAACTAATGGACATTGGTTTAAAAAATAGAGCAAAGGGTTCAACTGCTATGAATGAAAGAAGTAGCCGATCTCACAGTGTGGTTTCGATTCATGTTCGTGGGGCGGATAAGAAATCTGGTTCGACTCTCCAAGGTAATCTTCATCTGATAGATTTGGCAGGAAGTGAAAGGATAGATCGCTCTGAAGTAATCGGAGATAGACTAAAGGAAGCACAACATATTAACAAATCACTGTCTGCTCTTGGAGATGTCATTTTTTCACTTTCTCAAAAGAGTTCTCATATACCATATAGAAACAGCAAACTCACACAAATTTTGCAATCCTCACTAGGTGGTCATGCAAAGACACTCATGCTAGTTCAAATCAATTCAGATGTAAAGTCTTATTCTGAATCTTTGAGTACTTTGAAGTTTGCTGAGAGAGTTTCTGGAGTTGAGTTAGGAGTTGCAAAAAGTACCAAAGATGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTCTCAAAGACACGATTTCGACAAAAGATGAAGAAATCGAGCGATTACAATTACTTAAGGATCTAAAAAATGTTAGCAATTCTGAGAAGCTTGAAGATTAA 2640 0.3477 MNSQPNNHTTESKDVGSSSSNSSGNNNLPQKKILSDSKFQHTTEPSGALNQVRHRFPDVFQQKGGSYADLPAAKISELMKSSSLDNAPTQSLLSVVNGILEESVERRNGEIPPRVACLLRKVVQEIERRISTQQGHLRTQNNLFKTREEKYQSRIRVLEALASGTNEENIIKEEKSAHDSKPIEKIVIEEKKTKDINHVEKTKEDEKKKEIDREVIRLMKEVEDKNMEKKEIDKEVKRLIKEVEEKNMEKKEIDKEVKRLIKEVEEKNMEISTFKQELEKMKKRYEVQCTKIENIERKDIDKEVEGKNMEKREVDEEIMRLKKEVEEKSMEKKEIDKEVMRLKKEVEEKNVEISTMKQELETMKNRYEEQCSKLKSEAEDVELELKQKSREHEAIMEKLRNKVRESEAIMESKYQKWNMKQNIIQKAVSFQFSSIQKLKLSWESIKQDVVKERMIYKEECNRLGVNLKPLVHAAENYQTVLAENRKLFNELQELKGNIRVYCRIRPFIPGQKEKQSIVERIGESDLVVANPSKQGKEALKTFKFNKIFGPTSTQAEVYDDIQDFIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNGATNESLGVNYRALNDLFNISSSRQSSIVYDIGVQIIEIYNEQVRDLLTTDISVKKFGILNHSQPNGLAVPDASMHPVKSTADVIKLMDIGLKNRAKGSTAMNERSSRSHSVVSIHVRGADKKSGSTLQGNLHLIDLAGSERIDRSEVIGDRLKEAQHINKSLSALGDVIFSLSQKSSHIPYRNSKLTQILQSSLGGHAKTLMLVQINSDVKSYSESLSTLKFAERVSGVELGVAKSTKDGRDVRELMEQVASLKDTISTKDEEIERLQLLKDLKNVSNSEKLED 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07004 879 Gene3D Kinesin motor domain 440 826 IPR036961 -
Vifa1g07004 879 Pfam Kinesin motor domain 503 822 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07004 879 Coils Coil 208 298 - -
Vifa1g07004 879 MobiDBLite consensus disorder prediction 1 49 - -
Vifa1g07004 879 ProSiteProfiles Kinesin motor domain profile. 497 824 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07004 879 Coils Coil 304 416 - -
Vifa1g07004 879 PANTHER KINESIN-LIKE PROTEIN KLP-3 297 865 IPR027640 GO:0003777|GO:0007018
Vifa1g07004 879 MobiDBLite consensus disorder prediction 1 53 - -
Vifa1g07004 879 Coils Coil 477 497 - -
Vifa1g07004 879 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 439 826 - -
Vifa1g07004 879 Coils Coil 838 865 - -
Vifa1g07004 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 862 IPR027417 -
Vifa1g07004 879 Gene3D - 334 377 - -
Vifa1g07004 879 Gene3D - 251 293 - -
Vifa1g07004 879 PRINTS Kinesin heavy chain signature 694 711 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07004 879 PRINTS Kinesin heavy chain signature 725 743 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07004 879 PRINTS Kinesin heavy chain signature 571 592 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07004 879 PRINTS Kinesin heavy chain signature 774 795 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07004 879 SMART kinesin_4 495 832 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07004 Vifa-Chr1 1082411756 1082416540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07004 180 858 Calmodulin-binding Proteins AT5G65930 29.471 4.54e-63 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07004 K10406 - gmx:100779403 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07004 1 1082411756 1082416540 Vifa1g07005 1 1082411756 1082416540 PCT