Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06999 ATGGAAGTACTTCCTTGTTCTGGCGTTCAATATGCCGGGGAATCTGATTGCCCTCAACACGGTTCAGAAACAACTTTTATCTACCAGGAAGAACCTAGTTTCCCTGAAAACGCCGAACAAGCTAAATTGGCAGATGATCAACTGAATGAATCACTGCATAAGATTCAAGAACCAGAGATAGAAATGCAAGATGACGGGACACACAATGCGTGTGCTTCGTTGACTAATTCAAATTGTCAATGCAATGGAGCTTCATGTTGCGACTGTCAAGTGGAAGATCAAAAGAATTATGGTAGTTTCGTTGATTTTGATGATGAAATGATGAATGATCGTTACCTAACCTCTGAGAATTCTCTTGCTGTTCTTGATACAATTGAAAGTGAATCGCCAAACAACGGTAGGGAAGGAGACTTGTCATTTTCTGAACCTCAGTGGCTAGAGGGGGATGCATCTGTTGCATTGTGGGTCAAGTGGAGAGGGAAGTGGTTGGCTGGTATCCGATGTGCAAGGGCCGACTGGCCATTATCAACTTTGAGAGCAAAACCAACTCATGACCGAAAGAAGTATTTTGTCATATTTTTTCCGCACACGAAGATTTATTCCTGGGCAGACACGCTGCTTGTTAGGTCAATTGATGAGTTTCCGCATCCTGTTGCATACAAGACTCATCAGGTAGGATTGAAATTAGTAAGGGACTTAACAGCTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGTTGAACATCGTTGATCAGTTTCATCTTAATGCTTTAACAGAAATTGCCCGCGACGTGAAGCTCTGGAAGGCATTCGCCATGGAGGCTTCTCATTCTAATGGTTATTGTGAATTTGGAAGAATGCTTCTAAAGATACATAATAGCATCTTGGGGCACTACATAAGGGCTGACTGGTTACAGTATTCTTCACACTCTTGGATTGAACGATGTCAGAGTACTAATAGTGCTGAATCAGTAGAACTGCTGAAAGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACAATCTCTGGAACTCACCAGTGCAACCAATATTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAGCGAAATGGTTCGCAGCATCACCTTCCTTGTCTAGCAGCAAAGACACTCCTCGACAGATTTCTGTTGATCCATACCAAACAAACTTGCAGGCTTCTAGAAAAAGGCCTAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAGTTCAAGGGTTCAGATCACACTATTGCTCTTGTGAATGACCCTGGTTTCTTTAAGAATCAGGAGACATTGAGCACATTTACACCTGAGACTTTTAAACATGAAAATATTAGGAACGTATCTATCACAAATGATTTGTCCAGTAATTTGACCAACAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGCATACCAAAGAAATTCAATCGACACCTATAAATGAAATGGTTGCTGTAAACTCCGTGGATCCTGGTAGTAAGAATCGACAATGTATAGCTTTCATTGAAGCCAAAGGAAGACAGTGTGTGCGATGGGCAAATGAGGGAGATGTATACTGTTGTGTGCACTTATCCTCTCGTTTTTTGGCCGGCTCAGCAAATGCCGAAAATCCGGGTCAAACTGATACTCCTATGTGTGATGGTACAACTGTTGTGGGTACTAAATGTAAGCATCGGGCTCTACCTGGATCATTATACTGTAAGAAACATCGGCCTAATGCTGAAACAGAACAGGTCTCAAGGTTACCCCAAAGTACTATAAAGAGGAAACATGAAGAAAATTATACCGGTTCAGACAGCATGTTCTGTAAAGACATAGTATTGGTAAATGCTGAAGGTTCACTCCAAGTGGATCCAGTTCTATCCATTGCTGATGATTCATTACATGGAGAAAACAACTTGTATGAGAAGCCAATGCATTCTGAAAATGGTTATGTTGCAATGGAGGCTCTGATCTGTATAGGGTCTCCTCCATTTGATAATACGAATCCTTGTAGGGAAGCTCCTAAGCGCTATTCCTTATACTGCGAAACCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCTCAGACCTTTTGAGGGGCTGCAGCTCATGGGAGCAAAAGATACATCTGCATGAAGCATGTGAGCTTTTTTATCGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTTCCTAAGGATGTCCAATTCCAATGGGCTTTGACCGAAGCGTCTAAAGAATTTGGTGTTGGGGAATTTTTTACTAAGTTGGTTCTTAGTGAAAAAGAGAGAATCAAATCAATGTGGGGATTCAACGATGACATGAATGTATTATCTGTAATAGCAGAAGAACAACAACAACCACTCTTGCTCTTGCCACCCACAATTAATCAGAGCTGTGATGATGAAAATGCCATTAAGTGTAAGATATGTTCAACACAATTTCCTGATGACCAAACACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTTTTTAGAGGCTATGCATGTGCCATTTGTTTGGATTCTTTTACTAATAAGAAACTATTGGAAACTCATGTTCAGGAGAGACATCATGTGCAGTTTGTCGAACAGTGCATGCTTCTCCAGTGCATTCCTTGTGGGAGTCATTTTGGAAATTCTGAACAATTATGGCAGCATGTTTTATCCTCTCATCATGTTGATTTTAAGCCATCAAAAGCTCCCGAGCAGCAAACTTTCTCTACTGGCGAAGGATCGCTAGTAAAACATGACCAGGGAAATTCGGCCGCTTTGGAAAATAATTCTGAGAATCCAGGTGGTCCACGGAGGCTTAGTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGGCGACATCATCAAGCTGCTCATATGGGGCCCAATCTGGTTAGCAACCGTCCTGCTAAGAGGGGGGTTCGCTATTATGCATATAAATTAAAAACTGGCAGGCTAAGCCGCCCTAGATTTAAAAAAGGTTTGGGCGCAGCAGCCTCATTAAGGATGAGAAATAAAGCTAATGCTAATTTAAAGCGATGCATTCAGGCAACAAAGTCAATCGGCGTGGAAGAAACAACCGTGCAACCTCATATAACAGAAACAACAAATATTAGTGGATTGACAGAACATCAATGTTCAGCTGTTGCCAAAATTTTGTTTTCAGAAATTCAGAAAACTAAACCTCGGCCTAACAATCTTGATATTTTATCAGTTGCTCGCACTGCTTGCTGCAAAGTTAATCTAGTAGCAACACTGGAAGAGAAATTTGGAGCTCTACCTGAAAAGCTCTATTTAAAGGCAGCAAAACTTTGCAGTGAGCGTAATGTTGTTGTGAAATGGCACCATGAGGGATTTGCTTGTCCCCGAGGTTGCAACTTGTTGAAGGATCAAGCCTCACAATCTCCTTTAGAATCTCTTCCAAATGGTTTCGTAATGCCAAAATCTGTAAATTTGTCTGATCCTACGGGTGACGAATGGGATGTTGACGAGTTTCATTGCATAATTGATGCACAAAGTTTACAATTAGGTTCACGGAAAAAGGCTATTGTATTGTGTGATGACATTAGCTTTGGGAAGGAGTCAGTTCCTGTTATTTGTGTTGTAGATCAAGAACTTCTACATTCTCTAAATGAGCAAGGGTTTAATGAACAAGATATAATCTCTTCTAAACCTTGGGAGAGTTTCTCCTATGTTACGAAGCCAATAATTGATCAATCCCTTAGTCTTGAATCCGAGAGTCCGCAATTGGGATGTGCCTGCTCATATTCTACCTGTGGTCCTGAAACATGTGATCATGTATACCTATTTGGTAATGACTATGCTGATGCAAAAGACATAGTTGGGAAACCAATGCGTGGCAGATTCCCATATGATGCAAACGGTCGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACCATATGTGCAGATGCAACAAATTCTGTCCAAACAGAATATTACAGAATGGAGTCCAAGTCAGATTGGAAGTCTTCACTACAGAGAAAAAGAGATGGGCAGTAAGAGCTGGAGAAACTATCCTACGCGGAACATTTGTTTGCGAGTACATAGGAGAGGTTTTAGATGTGCAGGAGGCACACCGCAGGCACGAAAGATATGGTGAAGGGAATTGCAGTTATTTCTACGACATCGACTCTCGAGTTAATGATATGAGCAGATTGATTGAAGAACAGGTTCAGTATGTGGTTGATGCTACTAAATATGGAAATGTGTCGAGGTTCATCAATCATAGCTGCTCACCGAATCTTGTGAGTCACCAAGTTCTTATAGAGAGCATGGATTGTGAGCGTTCACACATCGGTTTTTATGCAAGTCGAGATATTGCCGCAGGCGAAGAGCTGACATACGACTTTCAGGAACGGCTTTACTAG 4476 0.412 MEVLPCSGVQYAGESDCPQHGSETTFIYQEEPSFPENAEQAKLADDQLNESLHKIQEPEIEMQDDGTHNACASLTNSNCQCNGASCCDCQVEDQKNYGSFVDFDDEMMNDRYLTSENSLAVLDTIESESPNNGREGDLSFSEPQWLEGDASVALWVKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVIFFPHTKIYSWADTLLVRSIDEFPHPVAYKTHQVGLKLVRDLTAARRFIMQKLVVGMLNIVDQFHLNALTEIARDVKLWKAFAMEASHSNGYCEFGRMLLKIHNSILGHYIRADWLQYSSHSWIERCQSTNSAESVELLKEELFDSILWNDVNNLWNSPVQPILGSEWKTWKHDVAKWFAASPSLSSSKDTPRQISVDPYQTNLQASRKRPKLEVRRADTHASKVEFKGSDHTIALVNDPGFFKNQETLSTFTPETFKHENIRNVSITNDLSSNLTNKWNEIVVEAADSDFLHTKEIQSTPINEMVAVNSVDPGSKNRQCIAFIEAKGRQCVRWANEGDVYCCVHLSSRFLAGSANAENPGQTDTPMCDGTTVVGTKCKHRALPGSLYCKKHRPNAETEQVSRLPQSTIKRKHEENYTGSDSMFCKDIVLVNAEGSLQVDPVLSIADDSLHGENNLYEKPMHSENGYVAMEALICIGSPPFDNTNPCREAPKRYSLYCETHLPSWLKRARNGKSRIVSKEVFSDLLRGCSSWEQKIHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKEFGVGEFFTKLVLSEKERIKSMWGFNDDMNVLSVIAEEQQQPLLLLPPTINQSCDDENAIKCKICSTQFPDDQTLGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSSHHVDFKPSKAPEQQTFSTGEGSLVKHDQGNSAALENNSENPGGPRRLSCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNRPAKRGVRYYAYKLKTGRLSRPRFKKGLGAAASLRMRNKANANLKRCIQATKSIGVEETTVQPHITETTNISGLTEHQCSAVAKILFSEIQKTKPRPNNLDILSVARTACCKVNLVATLEEKFGALPEKLYLKAAKLCSERNVVVKWHHEGFACPRGCNLLKDQASQSPLESLPNGFVMPKSVNLSDPTGDEWDVDEFHCIIDAQSLQLGSRKKAIVLCDDISFGKESVPVICVVDQELLHSLNEQGFNEQDIISSKPWESFSYVTKPIIDQSLSLESESPQLGCACSYSTCGPETCDHVYLFGNDYADAKDIVGKPMRGRFPYDANGRIILEEGYLVYECNHMCRCNKFCPNRILQNGVQVRLEVFTTEKKRWAVRAGETILRGTFVCEYIGEVLDVQEAHRRHERYGEGNCSYFYDIDSRVNDMSRLIEEQVQYVVDATKYGNVSRFINHSCSPNLVSHQVLIESMDCERSHIGFYASRDIAAGEELTYDFQERLY 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06999 1491 Gene3D SET domain 1193 1490 IPR046341 -
Vifa1g06999 1491 Gene3D Classic Zinc Finger 819 891 - -
Vifa1g06999 1491 ProSitePatterns Zinc finger C2H2 type domain signature. 895 917 IPR013087 -
Vifa1g06999 1491 ProSitePatterns Zinc finger C2H2 type domain signature. 964 985 IPR013087 -
Vifa1g06999 1491 ProSiteProfiles Pre-SET domain profile. 1276 1352 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa1g06999 1491 SMART preset_2 1212 1339 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa1g06999 1491 SUPERFAMILY SET domain 1205 1487 IPR046341 -
Vifa1g06999 1491 ProSiteProfiles Zinc finger C2H2 type domain profile. 893 922 IPR013087 -
Vifa1g06999 1491 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1490 - -
Vifa1g06999 1491 Pfam Zinc finger C2H2-type, 3 repeats 861 986 IPR040689 -
Vifa1g06999 1491 SMART c2h2final6 859 882 IPR013087 -
Vifa1g06999 1491 SMART c2h2final6 825 848 IPR013087 -
Vifa1g06999 1491 SMART c2h2final6 962 985 IPR013087 -
Vifa1g06999 1491 SMART c2h2final6 893 916 IPR013087 -
Vifa1g06999 1491 Pfam SET domain 1367 1486 IPR001214 GO:0005515
Vifa1g06999 1491 ProSiteProfiles SET domain profile. 1355 1487 IPR001214 GO:0005515
Vifa1g06999 1491 SMART set_7 1355 1491 IPR001214 GO:0005515
Vifa1g06999 1491 Pfam Pre-SET motif 1215 1347 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa1g06999 1491 ProSitePatterns Zinc finger C2H2 type domain signature. 827 848 IPR013087 -
Vifa1g06999 1491 ProSiteProfiles Zinc finger C2H2 type domain profile. 962 990 IPR013087 -
Vifa1g06999 1491 ProSiteProfiles Zinc finger C2H2 type domain profile. 859 882 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06999 Vifa-Chr1 1081950943 1081958545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06999 113 1489 C2H2 Transcription Factor Family AT2G23740 51.474 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g06999 Pre-SET 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06999 - - gmx:100786757 2315.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06999 1 1081950943 1081958545 Vifa1g06999 1 1081950943 1081958545 ECH