Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06993 ATGGGAATAGCTGCACCAGTACCATTTTCTTCTTCTGTTATTTACTTGAAGAAACACTATAACCAAACCTTGAAATATTGTTCAAATTCTATGTCCTCACAAGATTATCATCAGCAAGCCATCTTCGGATTCTCCTCGAATGGATTCGAGAGATCGTTGCAGCAGCAGCAGCAGATCCAGAGGGAGAAAATGAGGTTGTTGCAAGGATTTGATTCATCTGCGGCAGAATCTTTAGAAGAAGAAAGAGGTGGTGGTGTGTATGAAACAGCAAGTATGTTATCAGAGATGTTTAATTTCGCTGATCCTTCAAGCACAGCTGAATTATTAGAAACCGCGAGGTTTCGATCTTCGTCGTCTTCTTCATCAAGACATCATCATCATCAACAGCAGCAACAACAACAAACAATCTCAGGAAATGATAACTGGTATGGTAATAACAGACAAGGGATGCAACATCAGATTTCGAGTATTAATGTAGCAGCTGATTCAGCTGCTGCCATGCAACTTTTTCTGACAAACCCTTCTCAATCTCATCAGACAACAACATCATCATCTTCTCCTCCTCCCCCTCCTCAAAATTCTTCAACTCTTCACATGTTACTCCCAAACCCTCCCTCTAATAATTCTCTCCATGGTTTTCCCAATTCTGGTAATAATTTTGGACATTTCACATGGGGTGGTGATTCTGTGGAAGCACAAGGACAAGGACAAAGACAAGGACAAGGACAAAGACAAGGTCAAGGTCTTTCGTTATCGTTATCTTCTTCATTGGAAGCTGCAAAAGCTGAGGAGGAACTGAGAATGGGAGGAGAAGATAATGGTTTTCTGTATTACAATAATCAAGGTGTAGGTGGACCCTCTTCATCCTATCCGTACAAACTAAATCATCAAGCACTGAATTTACAATTGCAAGGAGGAGGAGGAGAAGGAGGGACCAATATTAATGGAGGATACCAATTACAAACTCATCATCAAGGAGGATTCGGAAGCGTAGTAGTAAATGTTTTGAGAAATTCAAAATACATGAAAGCCACACAAGAATTGCTTCAAGAATTTTGCAGTGTTGGAAGAGGTCAATTTATTAAGAAGAAGATTAAGTTCAATTCAAACCCTAATAATTCCTCCTCCAATGCTTCTGGTGATCCTATAATTCCTTCATCTTCATCAAAAGACAATCCTCTCCCTTTGTCTGCTGCTGATAAGATTGAGCATCAAAGAAGGAAGGTGGACAGAAGATACAATCACTATTGTGAACAAATGCAAGTGGTAGTGAACTCATTCGACGTGATGATGGGTTTCGGAGCAGCAATTCCATACACATCACTAGCACAGAAAGCAATGTCTCGTCATTTCCGGTGTCTAAAGGATGCAATAACAGCAGAGGTGAAGAAAAGTTGTGAGATGCTTGGAGAGAAAGAAGGTGCAGGAGGAGGTTTAACGAAGGGAGAGACTCCTAGACTTAAGGCACTTGAACAAAGCCTAAGACAACAGAGAGTGTTTCATCAGATGGGGATGATGGATCAAGAAGCTTGGAGACCACAAAGAGGCTTGCCTGAACGTTCTGTCAATGTTTTGAGAGCTTGGCTTTTTGAGCATTTTCTACACCCGTATCCAAGTGATGCAGATAAGCATCTATTAGCACGACAAACTGGCCTATCACGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTTAGATTGTGGAAACCTATGGTGGAAGAGATGTACCAACAAGAACTTAATGAAGCAGAGTTTGCAGAAGAGAGAGAAAGAAACAACCAAAGCAACAACAGCAATAGCAATAGCAACGATGGCCACCAAACACAGACATCACCAACATCAACAGCAACAGATCATCAGCCACCACCACAACCACAACCAACAAGAAAAAGATCCGATATCAATGCTCATGAAAACGACTCTTCACTGCTTGCAATCAATAGACAGCAAGACTTCTCGGAAAACCAAGCAGTCCAATCCACCTCCACCACCACCACAACCACCATCAACGTCACCACCGCCTTGGCTCCACCCTTTGATTCAGCTCTGTCCCCACACAGATCGATGGTCATGGATGACACGTGTCGGTATGGAAGCTTAGTTGCAGAAGATTATGAGACAGCGGCCGATGTTAATGCTGACATTGGATCATCAACTCTTATCAGATTTGGGCCCACTAATGGTGACGTAGATTTTGGAAGCATTTAA 2211 0.4206 MGIAAPVPFSSSVIYLKKHYNQTLKYCSNSMSSQDYHQQAIFGFSSNGFERSLQQQQQIQREKMRLLQGFDSSAAESLEEERGGGVYETASMLSEMFNFADPSSTAELLETARFRSSSSSSSRHHHHQQQQQQQTISGNDNWYGNNRQGMQHQISSINVAADSAAAMQLFLTNPSQSHQTTTSSSSPPPPPQNSSTLHMLLPNPPSNNSLHGFPNSGNNFGHFTWGGDSVEAQGQGQRQGQGQRQGQGLSLSLSSSLEAAKAEEELRMGGEDNGFLYYNNQGVGGPSSSYPYKLNHQALNLQLQGGGGEGGTNINGGYQLQTHHQGGFGSVVVNVLRNSKYMKATQELLQEFCSVGRGQFIKKKIKFNSNPNNSSSNASGDPIIPSSSSKDNPLPLSAADKIEHQRRKVDRRYNHYCEQMQVVVNSFDVMMGFGAAIPYTSLAQKAMSRHFRCLKDAITAEVKKSCEMLGEKEGAGGGLTKGETPRLKALEQSLRQQRVFHQMGMMDQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELNEAEFAEERERNNQSNNSNSNSNDGHQTQTSPTSTATDHQPPPQPQPTRKRSDINAHENDSSLLAINRQQDFSENQAVQSTSTTTTTTINVTTALAPPFDSALSPHRSMVMDDTCRYGSLVAEDYETAADVNADIGSSTLIRFGPTNGDVDFGSI 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06993 736 ProSiteProfiles 'Homeobox' domain profile. 508 571 IPR001356 GO:0003677
Vifa1g06993 736 CDD homeodomain 511 572 IPR001356 GO:0003677
Vifa1g06993 736 MobiDBLite consensus disorder prediction 174 252 - -
Vifa1g06993 736 FunFam BEL1-like homeodomain protein 4 514 576 - -
Vifa1g06993 736 Pfam Associated with HOX 335 459 IPR006563 -
Vifa1g06993 736 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 192 601 - -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 367 405 - -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 230 252 - -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 593 618 - -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 112 147 - -
Vifa1g06993 736 SMART HOX_1 511 575 IPR001356 GO:0003677
Vifa1g06993 736 SMART prehox3 330 460 IPR006563 -
Vifa1g06993 736 Pfam Homeobox KN domain 528 567 IPR008422 GO:0003677|GO:0006355
Vifa1g06993 736 SUPERFAMILY Homeodomain-like 513 578 IPR009057 -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 196 223 - -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 367 394 - -
Vifa1g06993 736 Gene3D - 514 576 - -
Vifa1g06993 736 MobiDBLite consensus disorder prediction 586 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06993 Vifa-Chr1 1080931418 1080937194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06993 1 558 Homeobox Transcription Factor Family AT4G36870 46.326 2.28e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa1g06993 POX 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06993 - - cam:101513121 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06993 1 1080931418 1080937194 Vifa1g06993 1 1080931418 1080937194 ECH
Vifa4g02510 4 759820064 759826404 Vifa1g06993 1 1080931418 1080937194 ECH
Vifa1g06993 1 1080931418 1080937194 Vifa4g02510 4 759820064 759826404 PCT