Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06992 ATGGGAATAGCTGCACCAGTACCATTTTCTTCTTCTGTTATTTACTTGAAGAAACACTATAACCAAACCTTGAAATATTGTTCAAATTCTATGTCCTCACAAGATTATCATCAGCAAGCCATCTTCGGATTCTCCTCGAATGGATTCGAGAGATCGTTGCAGCAGCAGCAGCAGATCCAGAGGGAGAAAATGAGGTTGTTGCAAGGATTTGATTCATCTGCGGCAGAATCTTTAGAAGAAGAAAGAGGTGGTGGTGTGTATGAAACAGCAAGTATGTTATCAGAGATGTTTAATTTCGCTGATCCTTCAAGCACAGCTGAATTATTAGAAACCGCGAGGTTTCGATCTTCGTCGTCTTCTTCATCAAGACATCATCATCATCAACAGCAGCAACAACAACAAACAATCTCAGGAAATGATAACTGGTATGGTAATAACAGACAAGGGATGCAACATCAGATTTCGAGTATTAATGTAGCAGCTGATTCAGCTGCTGCCATGCAACTTTTTCTGACAAACCCTTCTCAATCTCATCAGACAACAACATCATCATCTTCTCCTCCTCCCCCTCCTCAAAATTCTTCAACTCTTCACATGTTACTCCCAAACCCTCCCTCTAATAATTCTCTCCATGGTTTTCCCAATTCTGGTAATAATTTTGGACATTTCACATGGGGTGGTGATTCTGTGGAAGCACAAGGACAAGGACAAAGACAAGGACAAGGACAAAGACAAGGTCAAGGTCTTTCGTTATCGTTATCTTCTTCATTGGAAGCTGCAAAAGCTGAGGAGGAACTGAGAATGGGAGGAGAAGATAATGGTTTTCTGTATTACAATAATCAAGGTGTAGGTGGACCCTCTTCATCCTATCCGTACAAACTAAATCATCAAGCACTGAATTTACAATTGCAAGGAGGAGGAGGAGAAGGAGGGACCAATATTAATGGAGGATACCAATTACAAACTCATCATCAAGGAGGATTCGGAAGCGTAGTAGTAAATGTTTTGAGAAATTCAAAATACATGAAAGCCACACAAGAATTGCTTCAAGAATTTTGCAGTGTTGGAAGAGGTCAATTTATTAAGAAGAAGATTAAGTTCAATTCAAACCCTAATAATTCCTCCTCCAATGCTTCTGGTGATCCTATAATTCCTTCATCTTCATCAAAAGACAATCCTCTCCCTTTGTCTGCTGCTGATAAGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTATCCATGCTTGATGAGGTGGACAGAAGATACAATCACTATTGTGAACAAATGCAAGTGGTAGTGAACTCATTCGACGTGATGATGGGTTTCGGAGCAGCAATTCCATACACATCACTAGCACAGAAAGCAATGTCTCGTCATTTCCGGTGTCTAAAGGATGCAATAACAGCAGAGGTGAAGAAAAGTTGTGAGATGCTTGGAGAGAAAGAAGGTGCAGGAGGAGGTTTAACGAAGGGAGAGACTCCTAGACTTAAGGCACTTGAACAAAGCCTAAGACAACAGAGAGTGTTTCATCAGATGGGGATGATGGATCAAGAAGCTTGGAGACCACAAAGAGGCTTGCCTGAACGTTCTGTCAATGTTTTGAGAGCTTGGCTTTTTGAGCATTTTCTACACCCGTATCCAAGTGATGCAGATAAGCATCTATTAGCACGACAAACTGGCCTATCACGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTTAGATTGTGGAAACCTATGGTGGAAGAGATGTACCAACAAGAACTTAATGAAGCAGAGTTTGCAGAAGAGAGAGAAAGAAACAACCAAAGCAACAACAGCAATAGCAATAGCAACGATGGCCACCAAACACAGACATCACCAACATCAACAGCAACAGATCATCAGCCACCACCACAACCACAACCAACAAGAAAAAGATCCGATATCAATGCTCATGAAAACGACTCTTCACTGCTTGCAATCAATAGACAGCAAGACTTCTCGGAAAACCAAGCAGTCCAATCCACCTCCACCACCACCACAACCACCATCAACGTCACCACCGCCTTGGCTCCACCCTTTGATTCAGCTCTGTCCCCACACAGATCGATGGTCATGGATGACACGTGTCGGTATGGAAGCTTAGTTGCAGAAGATTATGAGACAGCGGCCGATGTTAATGCTGACATTGGATCATCAACTCTTATCAGATTTGGGCCCACTAATGGTGACGTAGATTTTGGAAGCATTTAA 2238 0.4205 MGIAAPVPFSSSVIYLKKHYNQTLKYCSNSMSSQDYHQQAIFGFSSNGFERSLQQQQQIQREKMRLLQGFDSSAAESLEEERGGGVYETASMLSEMFNFADPSSTAELLETARFRSSSSSSSRHHHHQQQQQQQTISGNDNWYGNNRQGMQHQISSINVAADSAAAMQLFLTNPSQSHQTTTSSSSPPPPPQNSSTLHMLLPNPPSNNSLHGFPNSGNNFGHFTWGGDSVEAQGQGQRQGQGQRQGQGLSLSLSSSLEAAKAEEELRMGGEDNGFLYYNNQGVGGPSSSYPYKLNHQALNLQLQGGGGEGGTNINGGYQLQTHHQGGFGSVVVNVLRNSKYMKATQELLQEFCSVGRGQFIKKKIKFNSNPNNSSSNASGDPIIPSSSSKDNPLPLSAADKIEHQRRKVKLLSMLDEVDRRYNHYCEQMQVVVNSFDVMMGFGAAIPYTSLAQKAMSRHFRCLKDAITAEVKKSCEMLGEKEGAGGGLTKGETPRLKALEQSLRQQRVFHQMGMMDQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELNEAEFAEERERNNQSNNSNSNSNDGHQTQTSPTSTATDHQPPPQPQPTRKRSDINAHENDSSLLAINRQQDFSENQAVQSTSTTTTTTINVTTALAPPFDSALSPHRSMVMDDTCRYGSLVAEDYETAADVNADIGSSTLIRFGPTNGDVDFGSI 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06992 745 MobiDBLite consensus disorder prediction 174 252 - -
Vifa1g06992 745 SMART prehox3 330 469 IPR006563 -
Vifa1g06992 745 SUPERFAMILY Homeodomain-like 522 587 IPR009057 -
Vifa1g06992 745 MobiDBLite consensus disorder prediction 602 627 - -
Vifa1g06992 745 Gene3D - 523 585 - -
Vifa1g06992 745 MobiDBLite consensus disorder prediction 367 400 - -
Vifa1g06992 745 FunFam BEL1-like homeodomain protein 4 523 585 - -
Vifa1g06992 745 MobiDBLite consensus disorder prediction 230 252 - -
Vifa1g06992 745 Pfam Homeobox KN domain 537 576 IPR008422 GO:0003677|GO:0006355
Vifa1g06992 745 MobiDBLite consensus disorder prediction 112 147 - -
Vifa1g06992 745 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 192 610 - -
Vifa1g06992 745 MobiDBLite consensus disorder prediction 595 644 - -
Vifa1g06992 745 CDD homeodomain 520 581 IPR001356 GO:0003677
Vifa1g06992 745 Pfam Associated with HOX 335 468 IPR006563 -
Vifa1g06992 745 ProSiteProfiles 'Homeobox' domain profile. 517 580 IPR001356 GO:0003677
Vifa1g06992 745 SMART HOX_1 520 584 IPR001356 GO:0003677
Vifa1g06992 745 MobiDBLite consensus disorder prediction 367 394 - -
Vifa1g06992 745 MobiDBLite consensus disorder prediction 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06992 Vifa-Chr1 1080931418 1080937194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06992 1 567 Homeobox Transcription Factor Family AT4G36870 47.444 5.08e-135 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa1g06992 POX 2.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06992 - - cam:101513121 664.84