Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06991 ATGGAAAATATCCCCGAATCTGAGAATCCAAAACCTCAAGGAACTCTCATTCACGACGGAAAATACACTCAGTACAACGTCTTAGGCAACGTTTTTGAAGTCTACTCCAAGTACATTCCTCCTCTTCAACCCGTCGGTCGCGGCGCATACGGCATCGTTTGCTGTGCAACGAACTCCGTAACGGAAGAAGGTGTTGCGATTAAGAAGATTGGTGACGCGTTTGATAATAGGATTGATGCCAAGAGAACGCTTAGGGAAATTAAGCTTCTCTGTCACATGGATCATGATAATGTGATTAAGATTAAGGATATAATTAATCCGGCTGATAAGGAAAAGTTTAATGATGTGTATATTGTCTATGAGTTGATGGATACTGATCTGCATCAGATTATACAATCTAATCAGGCTCTTACTGATGAGCACTGTCAGTATTTTCTGTATCAACTCTTGAGAGGATTGAAGTACATACACTCTGCAAATGTGTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTCAATGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTTGCCAGAACAACCTCTGAGACGGACTTCATGACAGAATATGTTGTGACTCGTTGGTACAGAGCCCCTGAATTACTACTGAACTGTTCAGAATATACTGCTGCTATTGATGTATGGTCAGTTGGTTGCATTTTGATGGAGATAATTAGAAGGGAGCCTCTATTTCCTGGTAAAGATTATGTTCAGCAATTGGCGCTCATAACTGAGTTGTTAGGTTCACCAAATGAAGAAGATCTTGGATTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTACCGCATGTAGAAAAGCAGCCATTTGGCCATAGGTTTCCTGATCTGTCCTCACTGGCCATTGATCTTGCTGAGAAAATGTTGGTTTTCGATCCCTCCAAACGCATAACTGTTGAGGAAGCACTGAATCACCCATATATGTCAAGTCTTCATGAGATCAACGAGGAGCCTGTTTGTCCATCCCCTTTTGTCTTTGATTTTGAACAGGCAACTCTGAACGAAGAAGACATAAAGGATCTCATATGGAAGGAATCTCTGAACTTCAGCCAGGAGCAGATACTGCAATAG 1122 0.4118 MENIPESENPKPQGTLIHDGKYTQYNVLGNVFEVYSKYIPPLQPVGRGAYGIVCCATNSVTEEGVAIKKIGDAFDNRIDAKRTLREIKLLCHMDHDNVIKIKDIINPADKEKFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPNEEDLGFLRSDNAKKYVKQLPHVEKQPFGHRFPDLSSLAIDLAEKMLVFDPSKRITVEEALNHPYMSSLHEINEEPVCPSPFVFDFEQATLNEEDIKDLIWKESLNFSQEQILQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06991 373 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa1g06991 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 39 326 - -
Vifa1g06991 373 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Vifa1g06991 373 CDD STKc_TEY_MAPK 32 367 - -
Vifa1g06991 373 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Vifa1g06991 373 FunFam Mitogen-activated protein kinase 123 352 - -
Vifa1g06991 373 Pfam Protein kinase domain 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06991 373 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06991 373 SUPERFAMILY Protein kinase-like (PK-like) 42 331 IPR011009 -
Vifa1g06991 373 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06991 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vifa1g06991 373 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Vifa1g06991 373 FunFam Mitogen-activated protein kinase 24 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06991 Vifa-Chr1 1079782714 1079786394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06991 14 366 MAP Kinase Gene Family AT1G07880 78.754 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa1g06991 Pkinase 5.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06991 K04371 - gmx:100802929 681.404