Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06982 ATGTTTCATGCTATTTTTCTTGTCCTTTCCAGACTTTATGATTTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGAATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCGCGTCGATGA 543 0.4383 MFHAIFLVLSRLYDLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRELENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPRR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06982 180 SMART zf_4 154 178 IPR001876 -
Vifa1g06982 180 MobiDBLite consensus disorder prediction 116 148 - -
Vifa1g06982 180 Gene3D - 150 180 - -
Vifa1g06982 180 Gene3D - 5 111 - -
Vifa1g06982 180 SUPERFAMILY Ran binding protein zinc finger-like 152 179 IPR036443 -
Vifa1g06982 180 ProSitePatterns Zinc finger RanBP2-type signature. 156 175 IPR001876 -
Vifa1g06982 180 ProSiteProfiles Zinc finger RanBP2 type profile. 152 180 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06982 Vifa-Chr1 1077911701 1077913036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06982 16 179 ARIADNE family AT1G65430 64.024 1.70e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06982 K11968 - vum:124843329 272.707