Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06977 ATGGAACTTAAGCTTTCCTCCTTTGTTATTCCCTTTTCTCTTTTATTAATGTTTCATTTACTTGCAAAATACTACAAACAAAAAACTGCTTACAAGTTACCTCCTGGTCCAATGAAGTTACCAATCATTGGTAACCTTCATCAAATAGCAGCCCTAGGATCACTTCCACATCGTGTTTTTCAACAACTTGCGCATAAATATGGTCCTATTGTTCACCTAAAACTTGGTGAAATTTCTACCGTAGTTATAACCTCACCAAAGTTAGCAAAAGAAATATTAAAAACTCATGATGTTGTTTTTGCTAATAGGCCACATCTGCAATCATCTCATATCATGTCATATGGTTCAAAAGATATTGCATTTTCTCCATATAATGATTATTGGAAACAAATGAGAAAAATATGTATATTAGAGCTATTAAGTATCAAAAGAGTTCAAACTTTTGCTTATATTAGAGAAGATGAGACCCGAAATTTTATAAGATCAATTCACTCATCAGAAGGGTCGCCAGTCAATCTCACCCATAGAATTTTCTCATTAGTGAGTTCTATGGTTTCGAGATCGGCTTTTGGCGACAAAACAGAAGATCAAGAAGAGTTTGTGAATGTGATAAGAAAAGCTATAGAGTCTGTTGGAGGACTTGAACTTGCAGACTTGTTTCCTTCAAAGAAGACTATAATAAATATGCTATCTGGCGCGAAATCAAAGTCGGAAAAAATGCACAAAAATTCTGACAAAATAATGGAAATAATTGTAAAGAAGCATCAAGAGAAGCAAAAAAGAAAAAAAGAAGGGAATGTTAAAAATGATGAAGAAGAGCATGAAGATCTTGTTGATGTTCTTTTGAGAGTCCAAGAAGATGGAAGCCTTGATGTCCCAATTACAGCAAGCAACATAAAAGCTGTGATTTTTGATGTATTTGCAGCTGGAACTGACACAACAACATCAACAATAATATGGGCAATGTCAGAATTAATGAAAAATCCAAGTGTGATGAAGAAAGCCCAATCTGAATTAAGAGAAGCATGTAAAGGAAAAGAAATAATATCTGAAATTGATATACAAGAACTTCCATACCTAAAACTAGTTATAAAAGAAACATTGAGGCTTCACTCACCAAATCCTCTATTAATCCCTAGAGAATCCACTGAATTAACCAACATTGATGGTTATGATATACCAAAAAAGACTAAAGTGATGATAAATGTTTGGGCTATGGCAAGAGATCCTAAATATTGGACTGATGCTGAGAGGTTTATTCCAGAGAGATTTGAGGGTAATTTTATGGATTACAAGGGAAATAATTTTGAGTATCTTCCTTTTGGGGCAGGTAGAAGAATATGCCCTGGCTTATCATTTGGTGTAGCTGGTATAATGCTTCCATTGGCACTACTACTTTATCATTTTAATTGGGAGTTACCAAATAATATGAAACATGAGGATTTGGATATGACTGAACTTTATGGATTGGCTGTTGGAAGGAAAAGTGAGTTGTGTTTGATTCCAACTGTTTACTATGATATTTGA 1527 0.3399 MELKLSSFVIPFSLLLMFHLLAKYYKQKTAYKLPPGPMKLPIIGNLHQIAALGSLPHRVFQQLAHKYGPIVHLKLGEISTVVITSPKLAKEILKTHDVVFANRPHLQSSHIMSYGSKDIAFSPYNDYWKQMRKICILELLSIKRVQTFAYIREDETRNFIRSIHSSEGSPVNLTHRIFSLVSSMVSRSAFGDKTEDQEEFVNVIRKAIESVGGLELADLFPSKKTIINMLSGAKSKSEKMHKNSDKIMEIIVKKHQEKQKRKKEGNVKNDEEEHEDLVDVLLRVQEDGSLDVPITASNIKAVIFDVFAAGTDTTTSTIIWAMSELMKNPSVMKKAQSELREACKGKEIISEIDIQELPYLKLVIKETLRLHSPNPLLIPRESTELTNIDGYDIPKKTKVMINVWAMARDPKYWTDAERFIPERFEGNFMDYKGNNFEYLPFGAGRRICPGLSFGVAGIMLPLALLLYHFNWELPNNMKHEDLDMTELYGLAVGRKSELCLIPTVYYDI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06977 508 SUPERFAMILY Cytochrome P450 34 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 FunFam Cytochrome P450 71D8 26 502 - -
Vifa1g06977 508 Pfam Cytochrome P450 34 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 Gene3D Cytochrome P450 26 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06977 508 CDD CYP71-like 66 498 - -
Vifa1g06977 508 Coils Coil 253 273 - -
Vifa1g06977 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Vifa1g06977 508 PANTHER OS08G0105600 PROTEIN 58 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06977 Vifa-Chr1 1077302429 1077304834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06977 12 507 Cytochrome P450 AT3G26300 43.195 3.33e-145 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06977 - K15472 aprc:113870280 648.277