Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06971 ATGGCTATCTTCTTTCTTCCTTCTAGTTCTCATGCTCTTTTTCTTGCACTCATGTTGTTTTTTGTCACTAATATTTCAGCTCAACCACTACAACTCAGTGGAACAAACTTTTCATGCCCAGTGGATTCACCTCCTTCATGTGAAACCTATGTGACATACTTTGCTCGATCTCCAAACTTTTTGAGCCTAACTAACATATCTGATATATTTGATATGAGTCCTTTATCCATTGCAAAAGCTAGTAACATAGAAGACGAGGACAAGAAGCTGGTTGAAGGCCAAGTCTTACTAGTACCTGTAACTTGTGGTTGCACTAGAACTCGCTATTTCGCGAATTTCACCTACACAATCAAGCTAGGTGACAACTATTTCATAGTTTCAACCACTTCATACCAGAATCTTACAAATTATGTGGAATTCGAAAATTTCAACCCTAATCTAAGTCCAAATCTATTGCCACCAGAAATCAAAATTGTAGTCCCTTTATTCTGCAAATGCCCGTCGAAGAATCAGTTGAACAAAGGAATAAAGTATCTGATTACTTATGTGTGGCAGTCTAATGATAATGTTACCCTCGTAAGTTCTAAGTTTGGTGCATCACTGGGGGACATGTTTACTGAAAACAATCAAAACTTCACTGCTTCAACCAACGTTCCAATTTTGATCCCCGTGACAAAGTTACCGGTAATGGATCAACCGTCTTCTAATGGAAGAAAAAACAGCACTCAAAAACCTGCTTTTATAATTGGTATTAGCCTAGGAAGTGCTTTTTTCATTGTAGTTTTAACACTATCACTTGTTTATGTATATTGTCTGAAAATGAAGAGATTGAATAGAAGTACTTCATTGGCGGAGACTGCGGATAAGTTACTTTCAGGTGTTTCGGGTTATGTAAGCAAGCCAACAATGTATGAAATGGACGCGATCATGGAAGGTACAATGAACTTGAGTGAGAATTGTAAAATTGGTGAATCAGTTTACAAGGCCAATATAGATGGTAGAGTTTTAGCAGTGAAAAATATCAAGAAAGATGCTTCTGAGGAGCTGAAAATTTTGCAGAAGGTAAATCATGGAAATCTTGTGAAACTTATGGGTGTGTCTTCTGACAACGATGGAAACTGTTTCCTTGTTTATGAGTATGCTGAAAATGGATCACTTGATGAGTGGTTGTTCTCGGAGTCGTCGAAAACTTCGAACTCGGTGGTCTCGCTTACATGGTCTCAGAGAATAACAGTAGCCATGGATGTTGCAGTTGGTCTGCAATACATGCATGAACATACTTACCCAAGAATAATTCACAGAGACATCACAACAAGTAATATCCTTCTGGATTCAAACTTTAAGGCCAAGATAGCGAATTTTTCAATGGCTAGAACTTCAACAAATTCCATGATGCCGAAAATTGATGTTTTCGCTTTTGGGGTGGTTATGATTGAGTTGCTTACCGGCAAGAAAGCGATAACAACGAAGGAAAATGGTGAGGTGGTTATTCTATGGAAGGATTTCTGGAAGATTTTTGATCTAGAAGAGAATAGAGAAGAGAGCTTAAGAAAATGGATGGATCCTAAGCTAGAGAATTTTTATCCTATTGATAATGCTCTTAGTTTGGCTTCTTTGGCAGCGAATTGTACTGCAGATAAATCATTGTCAAGACCAAGCATTGCGGAAATTGTTCTTTGTCTTTCTCTTCTCAATAATCAATCATCATCTGAACCAATGTTAGAAAGATCCTTGACATCTGGTTTAGATGTTGAAGCTACTCATGTTGTTACCTCTATAGTAGCTCGATGA 1791 0.3774 MAIFFLPSSSHALFLALMLFFVTNISAQPLQLSGTNFSCPVDSPPSCETYVTYFARSPNFLSLTNISDIFDMSPLSIAKASNIEDEDKKLVEGQVLLVPVTCGCTRTRYFANFTYTIKLGDNYFIVSTTSYQNLTNYVEFENFNPNLSPNLLPPEIKIVVPLFCKCPSKNQLNKGIKYLITYVWQSNDNVTLVSSKFGASLGDMFTENNQNFTASTNVPILIPVTKLPVMDQPSSNGRKNSTQKPAFIIGISLGSAFFIVVLTLSLVYVYCLKMKRLNRSTSLAETADKLLSGVSGYVSKPTMYEMDAIMEGTMNLSENCKIGESVYKANIDGRVLAVKNIKKDASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLDEWLFSESSKTSNSVVSLTWSQRITVAMDVAVGLQYMHEHTYPRIIHRDITTSNILLDSNFKAKIANFSMARTSTNSMMPKIDVFAFGVVMIELLTGKKAITTKENGEVVILWKDFWKIFDLEENREESLRKWMDPKLENFYPIDNALSLASLAANCTADKSLSRPSIAEIVLCLSLLNNQSSSEPMLERSLTSGLDVEATHVVTSIVAR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06971 596 Gene3D Phosphorylase Kinase; domain 1 291 380 - -
Vifa1g06971 596 ProSiteProfiles Protein kinase domain profile. 284 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06971 596 SUPERFAMILY Protein kinase-like (PK-like) 320 562 IPR011009 -
Vifa1g06971 596 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Vifa1g06971 596 Gene3D Transferase(Phosphotransferase) domain 1 381 462 - -
Vifa1g06971 596 Gene3D Transferase(Phosphotransferase) domain 1 463 580 - -
Vifa1g06971 596 ProSitePatterns Tyrosine protein kinases specific active-site signature. 431 443 IPR008266 GO:0004672|GO:0006468
Vifa1g06971 596 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 14 569 - -
Vifa1g06971 596 Pfam Protein tyrosine and serine/threonine kinase 342 461 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06971 Vifa-Chr1 1076211476 1076213266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06971 46 562 Receptor kinase-like Gene Family AT2G23770 28.793 3.21e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g06971 PK_Tyr_Ser-Thr 6.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06971 - - cam:101515074 875.93