Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06970 ATGCATATCTTTCCCTTCATTTTCACTCTCTTCTTCTTCTTCTTGATCATCATCACCACCAACATCTCCATCATCCTAGGACAACAACCATACATTGGGCTATCCACAACAGCATGTCCTCGAAAAGGCGACTCGAAATCGATCCGAGGCTACACATGTAACGGCCAAACTCACACATGCCAAGCATACCTCACCTTCAGATCTCAACCAATTTACAGTTCAGTTTCAACAATCTCATCATTACTAGGCTCAAACCCTTCTCATCTCGCCGAAATCAACTCGGTTTCCTTAAACGAAACCTTCGAAACAAACAAGATGGTAATTGTTCCTGTCAACTGTTCTTGTTCTGGTAACTACTACCAAGCAAACACATCCTATGTTTTTCAAAACACAGACACTTATTTCCTAGTTGCTAACAACACTTTCGAAGGTCTTTCAACTTGTCAAGCTTTGATGCATGAGAATCATAACCCTGCTGATGTATATCCCGGTAGAAAATTACTTGTTCCTCTTAGATGTGCTTGTCCTACAAAGAACCAAACTGAAAAAAACATTAAGTATCTCTTAAGCTATTTGGTTAATTGGGATGATTCTGTTTCACTCATTAGTGAAAAATTTGGTGTTAACTTCAAAACCACTCTTGTAGCTAATACACTTACTTTAACACATTCTACAATTTATCCTTTTACAACACTTCTTGTTCCTCTTTTTGATAAGCCTAAAAGTTCTCAAATTCAAACTGTTTCGGTTTCACCACATCAACAACCTTCTCCTTCATCAACCTCGCCTACCACCGATAGAAAATCGAAAAAAACTTTGGTTTATATTGTGGTTGGAGTACTCGGAGGACTTGTAGTTATAGCTTTAACATTAATTCTATGTGCTTTAATTTTCTTCAAAAAGGGTAAAAAGAAAAATGATTTTTTGGTGAATGTTTCGGAGAGTACTAGTTATTCCGCGAAAGAGAAACCTGTGAAGAAAGAAGAAGAAAAATTGTTAGAGATTATTATATCTGGTATAGGCCAATCTTTCAAAGTGTATGATTTTGAGGAAATTAAGGTTGCAACAGATGATTTTAGTCCAAGTTTTTTGATTAGAGGTTGTGTTTATCGCGGTGTTATTAACGGGGATTTGGCTGTGATTAAGATAACAGAAGGAGATGTTTCAAAGGAGATACAAATTCTCAACAAAGTTAACCATTCTAATGTTATTCGCCTTTCGGGCGTTAGCTTCAACGAAGGACATTGGTATCTTGTTTATGAGTATGCTGCAAATGGATCGTTAAGCGATTGGATATTTTCTAAGAACAAAATGAGTGATGAGAAGTTTCTGAGTTGGATTCAGAGAATCAAGATTGCATTGGATGTTGCAAGAGGAGTTGAGTATCTGCATAGTTTCACTTCACCTCCGTATATTCATAAGGATCTTAAGTGTAGTAATGTTCTTCTCGACAACGATTTCAAGGCAAAGGTTGGAAGTTTAAGGCTTGCAAGGTGTGTGGGTGGATTGGATGATGATGATGATGAACAATTTGTTGCTACAAGACATATCGTTGGGACAAGAGGTTACATGGCACCGGAGTATTTGGAAAATGGAATTGTTTCTGCGAAGCTTGATGTTTATGCATTTGGTGTGTTGATGTTGGAAATCATCACAGGGAAAGAGGTTGCTGCTATTTTGACAGAAGATAATGAGAATCTGATAGACTTTTTAAGTGGTAATGAGAAGGTGAAGGAGTTAATGGATTCTTCGTTGCGAGGGAATTATCCATTTGAACTTGCTATGTTTGTGGTCGAAATTATTGAGAGTTGTTTAAAGAAGGATCCGGGAAATCGTCCTGCGATGAATGAGATTGTATCGGCTTTGTCAAGAACATTAAACTCTTCATTGAGTTGGGAAATGTGA 1905 0.3738 MHIFPFIFTLFFFFLIIITTNISIILGQQPYIGLSTTACPRKGDSKSIRGYTCNGQTHTCQAYLTFRSQPIYSSVSTISSLLGSNPSHLAEINSVSLNETFETNKMVIVPVNCSCSGNYYQANTSYVFQNTDTYFLVANNTFEGLSTCQALMHENHNPADVYPGRKLLVPLRCACPTKNQTEKNIKYLLSYLVNWDDSVSLISEKFGVNFKTTLVANTLTLTHSTIYPFTTLLVPLFDKPKSSQIQTVSVSPHQQPSPSSTSPTTDRKSKKTLVYIVVGVLGGLVVIALTLILCALIFFKKGKKKNDFLVNVSESTSYSAKEKPVKKEEEKLLEIIISGIGQSFKVYDFEEIKVATDDFSPSFLIRGCVYRGVINGDLAVIKITEGDVSKEIQILNKVNHSNVIRLSGVSFNEGHWYLVYEYAANGSLSDWIFSKNKMSDEKFLSWIQRIKIALDVARGVEYLHSFTSPPYIHKDLKCSNVLLDNDFKAKVGSLRLARCVGGLDDDDDEQFVATRHIVGTRGYMAPEYLENGIVSAKLDVYAFGVLMLEIITGKEVAAILTEDNENLIDFLSGNEKVKELMDSSLRGNYPFELAMFVVEIIESCLKKDPGNRPAMNEIVSALSRTLNSSLSWEM 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06970 634 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 633 - -
Vifa1g06970 634 ProSiteProfiles Protein kinase domain profile. 332 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06970 634 FunFam PTI1-like tyrosine-protein kinase 3 423 634 - -
Vifa1g06970 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Vifa1g06970 634 Gene3D Phosphorylase Kinase; domain 1 333 422 - -
Vifa1g06970 634 SMART serkin_6 363 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06970 634 Pfam LysM domain 193 235 IPR018392 -
Vifa1g06970 634 SUPERFAMILY Protein kinase-like (PK-like) 342 622 IPR011009 -
Vifa1g06970 634 Pfam Protein kinase domain 385 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06970 634 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Vifa1g06970 634 Gene3D Transferase(Phosphotransferase) domain 1 424 631 - -
Vifa1g06970 634 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06970 Vifa-Chr1 1076036282 1076038186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06970 3 633 Receptor kinase-like Gene Family AT2G23770 43.396 4.01e-174 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g06970 Pkinase 2.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06970 - - gmx:100815842 794.653