Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06969 ATGATATCTCAAAATACCAATTGTGTTCTATGGCGTTTTGTTTTGACCATTACGATTGTTATCTTTTTCATTCCAAAAATTAATTGTGCCAAACAATCCAAATTAATGGGTTTGAATATGAATATGATTGATCGTTGTTGGAGGCCAAATCCTAAATGGAGGAGTCAAAGACAACAAATAGCGACTTGTTCAATAGGCTATGTTGGAAAGATGACAAATAATATTGGTAATGACCTCATACAATATGAAGTTACTGATCCAAATGATGATCCTATAAACCCCAAACTAGGTACATTGAGATACGGAGCCTCTGTAATTCAAAATAAAGTATGGATCACATTTCAAAAAGATATGAATATTAGACTCATCAAACCCCTTCTCATTAGTAGTTTCACTACCATCGATGGTCGCGGGGTCAATGTCCACATTGCTAATAATGCATGTTTAATGATATTCAAGGCCACTAACATAATCATTCATAGTATTCGAATTCATCATTGCAAAGCTCAAGCCTCGGGGATGGTGATGGGGCCTAATGGAAAGGTGATTCATTTAGGTCCAGTAGATGGAGATGCAATAAGATTGGTCACTGCTTCAAAAATTTGGATTGATCATAATACACTTAATAATTGTGAAGATGGTCTTCTTGATGTCACCCGAGGTTCTAGTAACGTGACTATATCTAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGTCATGATGATGGATATTTGAGAGACAAAAACATGAAAGTCACTGTTGTGTACAATCACTTTGGACCTAACTGCAATCAAAGAATGCCTAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTATTTAGGATGGATGCAATATGCTATTGGTGGAAGTATGGGACCTAGTCTAAAAAGTGAGGCTAACCTCTTCATAGCACCAAAAGGTGGAAGTAAGGAGGTAACATGGAGAAAAAATGGTCAAATAAATGGGGACAAATGGGAATTTCATTCTGTAAGAGATGCATTTGAAAATGGAGCTTCTTTTGCAGTAACCAATGGTGGACGTGTGCAAAAGCCAAATTATAGTAATGAAGAATATTTTAAAGTTGTTGATGTTAAATCTGTTAGATCATTGACAAGATCATCAGGCGTACTTCAATGCAGTAAAACCTCTTTATGTTGA 1176 0.358 MISQNTNCVLWRFVLTITIVIFFIPKINCAKQSKLMGLNMNMIDRCWRPNPKWRSQRQQIATCSIGYVGKMTNNIGNDLIQYEVTDPNDDPINPKLGTLRYGASVIQNKVWITFQKDMNIRLIKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRIHHCKAQASGMVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTLNNCEDGLLDVTRGSSNVTISNNWFREQDKVMLLGHDDGYLRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKGGSKEVTWRKNGQINGDKWEFHSVRDAFENGASFAVTNGGRVQKPNYSNEEYFKVVDVKSVRSLTRSSGVLQCSKTSLC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06969 391 Pfam Pectate lyase 128 308 IPR002022 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Vifa1g06969 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Vifa1g06969 391 SMART amb_all 117 314 IPR002022 -
Vifa1g06969 391 Gene3D - 40 384 IPR012334 -
Vifa1g06969 391 PANTHER PECTATE LYASE 18-RELATED 37 388 IPR045032 GO:0030570
Vifa1g06969 391 SUPERFAMILY Pectin lyase-like 38 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06969 Vifa-Chr1 1075749743 1075751350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06969 71 328 Polysaccharide Lyase AT5G09280 68.605 1.87e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06969 K01728 - gmx:100780437 660.603