Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06949 ATGTCGAGTGGTTTTGGAGAATCAATGAGATCATCAACTGCGCCAAATCCATCCTGTTCTTCCGGGAACAGTTCCAACAACGATGCTGGTGATTTCGAATGTAACATTTGTTTTGATTTGGCTCAGGATCCAGTGATCACACTTTGTGGTCATTTGTTCTGTTGGCCATGTCTTTACAGGTGGTTACATCATCATTCTCATTCTCAAGAATGTCCTGTTTGTAAAGCACTTGTGGAAGAAGAGAAACTTGTTCCTCTTTACGGTAGAGGAAAATCGCAGACTGATCCGAGGACTAAATCCTATCCCGGAATGGAGATTCCTCGTCGTCCTTCCGGACAGAGGCCACAGACGGCGAATCCTCCTCCGGAAGGGAATTACGCTGGGGTTGGATTGATGGGGGGTTTTATTCCGATGGCAACTGCTAGATTCGGAAACTTTTCGCTTTCGACTGGTTTTGGTGGGTTTGGCGGGTTTCTTCCGTCGCTGTTCAATATTCACTTTCATGGTTTTCAGGATGGGACTGTTTACGGGACAACGTCTGGTTATCCCGTCGGGTTTAACCCATTTCAAGGTGGGAATGCGAGGGGTTTTAATTCGCAGGAGATGGGACAAGTGCAACGGCAGGAGGATAATGTTTTGAAGAATTTGCTTATGTTGATTGGAGTTCTTGTCCTTATAACGGTTATTTTTGTTATGTGA 699 0.4535 MSSGFGESMRSSTAPNPSCSSGNSSNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVEEEKLVPLYGRGKSQTDPRTKSYPGMEIPRRPSGQRPQTANPPPEGNYAGVGLMGGFIPMATARFGNFSLSTGFGGFGGFLPSLFNIHFHGFQDGTVYGTTSGYPVGFNPFQGGNARGFNSQEMGQVQRQEDNVLKNLLMLIGVLVLITVIFVM 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06949 232 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 17 88 - -
Vifa1g06949 232 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vifa1g06949 232 SUPERFAMILY RING/U-box 30 87 - -
Vifa1g06949 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa1g06949 232 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g06949 232 CDD RING-HC_AtRMA-like 32 76 - -
Vifa1g06949 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 96 IPR013083 -
Vifa1g06949 232 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Vifa1g06949 232 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Vifa1g06949 232 MobiDBLite consensus disorder prediction 88 123 - -
Vifa1g06949 232 SMART ring_2 34 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06949 Vifa-Chr1 1072409152 1072409850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06949 23 230 C3H Transcription Factor Family AT2G23780 62.385 7.57e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06949 K10666 - gmx:100814783 371.318