Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06948 ATGTCGAGTGGTTTTGGAGAATCAACGAATTCAGCATCATGTTCTTTAGAGAAGAGTTCCAACAAGGATGCTGTTGATTTTGATTGCAACGTTTGTTTTGATTTGGTTCGGGATCCAGTGGTCACACCTTGTGGCCACTTATTCTGTTGGCCGTGTCTTTACAGGTGGTTACATCATCGTTCTCGTTCCCGAGGATGTCCTGTTTGCAAAGCCGTTGTCGAGGAAGAGAAATTGGTTCCTATTTATGGTAAAGGAAAATCGGTAACTGATCCAAGAATGAAATCATATTTTGGAATGGAGATTCCTTGTCGTCCTTCGGCACAGAGGCCACCAACGGTTGATGATGATGATTACGATGATGATGATTACGATGATGATGATGATTACGATGATAATAATGATGATGAGGAGGAGGAGGAGGAGGAAGAGGAACTTGTTGAGGGAGAGGGAGAAGCGGAACTTGTTGAGGAAGAACGAGAGGAAGAGGAAGTCGCTGAGGAAGAGGAAGAAGAACTTGAGGATCCAGACTATGTGGCTCCTCCTCCTGAGAATCATTCGTTGATTCATATGTTGCTTGTGCGCTTCAAAGAGGATTGTGAGTCTACACGGAAGTGTCTCCAGGAGTGTCGTGCGGCAGCAGAGCAGCAGTTGAAGGAGTGTCGTGCCAAGGCAGAGCAGCGTATCGAGGAGTGTTGTGCGGAGTATCTTGCAGAGGCAGAGCAGCGGATCAATGACTGTTGGGCTGAGGCAGAGCAGCGGATCAAGGAGTATCGTGCAGAGCACGCTACTGATGCAGAGTAG 801 0.4732 MSSGFGESTNSASCSLEKSSNKDAVDFDCNVCFDLVRDPVVTPCGHLFCWPCLYRWLHHRSRSRGCPVCKAVVEEEKLVPIYGKGKSVTDPRMKSYFGMEIPCRPSAQRPPTVDDDDYDDDDYDDDDDYDDNNDDEEEEEEEEELVEGEGEAELVEEEREEEEVAEEEEEELEDPDYVAPPPENHSLIHMLLVRFKEDCESTRKCLQECRAAAEQQLKECRAKAEQRIEECCAEYLAEAEQRINDCWAEAEQRIKEYRAEHATDAE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06948 266 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vifa1g06948 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Vifa1g06948 266 Coils Coil 203 230 - -
Vifa1g06948 266 MobiDBLite consensus disorder prediction 114 177 - -
Vifa1g06948 266 SUPERFAMILY RING/U-box 26 82 - -
Vifa1g06948 266 Coils Coil 138 175 - -
Vifa1g06948 266 MobiDBLite consensus disorder prediction 100 180 - -
Vifa1g06948 266 SMART ring_2 29 69 IPR001841 -
Vifa1g06948 266 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Vifa1g06948 266 Pfam Zinc finger, C3HC4 type (RING finger) 29 69 - -
Vifa1g06948 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 122 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06948 Vifa-Chr1 1072236506 1072237306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06948 20 112 C3H Transcription Factor Family AT2G23780 65.591 2.10e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06948 K10666 - gmx:100814783 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06948 1 1072236506 1072237306 Vifa1g06948 1 1072236506 1072237306 ECH