Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06948 | ATGTCGAGTGGTTTTGGAGAATCAACGAATTCAGCATCATGTTCTTTAGAGAAGAGTTCCAACAAGGATGCTGTTGATTTTGATTGCAACGTTTGTTTTGATTTGGTTCGGGATCCAGTGGTCACACCTTGTGGCCACTTATTCTGTTGGCCGTGTCTTTACAGGTGGTTACATCATCGTTCTCGTTCCCGAGGATGTCCTGTTTGCAAAGCCGTTGTCGAGGAAGAGAAATTGGTTCCTATTTATGGTAAAGGAAAATCGGTAACTGATCCAAGAATGAAATCATATTTTGGAATGGAGATTCCTTGTCGTCCTTCGGCACAGAGGCCACCAACGGTTGATGATGATGATTACGATGATGATGATTACGATGATGATGATGATTACGATGATAATAATGATGATGAGGAGGAGGAGGAGGAGGAAGAGGAACTTGTTGAGGGAGAGGGAGAAGCGGAACTTGTTGAGGAAGAACGAGAGGAAGAGGAAGTCGCTGAGGAAGAGGAAGAAGAACTTGAGGATCCAGACTATGTGGCTCCTCCTCCTGAGAATCATTCGTTGATTCATATGTTGCTTGTGCGCTTCAAAGAGGATTGTGAGTCTACACGGAAGTGTCTCCAGGAGTGTCGTGCGGCAGCAGAGCAGCAGTTGAAGGAGTGTCGTGCCAAGGCAGAGCAGCGTATCGAGGAGTGTTGTGCGGAGTATCTTGCAGAGGCAGAGCAGCGGATCAATGACTGTTGGGCTGAGGCAGAGCAGCGGATCAAGGAGTATCGTGCAGAGCACGCTACTGATGCAGAGTAG | 801 | 0.4732 | MSSGFGESTNSASCSLEKSSNKDAVDFDCNVCFDLVRDPVVTPCGHLFCWPCLYRWLHHRSRSRGCPVCKAVVEEEKLVPIYGKGKSVTDPRMKSYFGMEIPCRPSAQRPPTVDDDDYDDDDYDDDDDYDDNNDDEEEEEEEEELVEGEGEAELVEEEREEEEVAEEEEEELEDPDYVAPPPENHSLIHMLLVRFKEDCESTRKCLQECRAAAEQQLKECRAKAEQRIEECCAEYLAEAEQRINDCWAEAEQRIKEYRAEHATDAE | 266 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06948 | 266 | ProSitePatterns | Zinc finger RING-type signature. | 44 | 53 | IPR017907 | - | |
Vifa1g06948 | 266 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 83 | IPR013083 | - | |
Vifa1g06948 | 266 | Coils | Coil | 203 | 230 | - | - | |
Vifa1g06948 | 266 | MobiDBLite | consensus disorder prediction | 114 | 177 | - | - | |
Vifa1g06948 | 266 | SUPERFAMILY | RING/U-box | 26 | 82 | - | - | |
Vifa1g06948 | 266 | Coils | Coil | 138 | 175 | - | - | |
Vifa1g06948 | 266 | MobiDBLite | consensus disorder prediction | 100 | 180 | - | - | |
Vifa1g06948 | 266 | SMART | ring_2 | 29 | 69 | IPR001841 | - | |
Vifa1g06948 | 266 | ProSiteProfiles | Zinc finger RING-type profile. | 29 | 70 | IPR001841 | - | |
Vifa1g06948 | 266 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 69 | - | - | |
Vifa1g06948 | 266 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 15 | 122 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06948 | Vifa-Chr1 | 1072236506 | 1072237306 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06948 | 20 | 112 | C3H Transcription Factor Family | AT2G23780 | 65.591 | 2.10e-43 | 145 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06948 | K10666 | - | gmx:100814783 | 176.407 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g06948 | 1 | 1072236506 | 1072237306 | Vifa1g06948 | 1 | 1072236506 | 1072237306 | ECH |