Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06944 ATGTTCACTTCAAGGAAGAAAATCAGCAAAGATAAGGGTGCTGAGCCAACTGAATTTGAAGAATCAGTTGGACAGGCGTTGTTCGATTTAGAGAACACCAACCACGAGCTTAAAAGTGAGCTAAAGGATTTATACATCAATTCAGCCGTTCAAATTGATGTGTCTGGCAATCGCAAGGCTGTGCTTATCAATGTCCCCTACAGACTCAGGAAAGGTTTCCGCAAGATTCATGTCAGGCTTGTTCGGGAGCTTGAGAAGAAATTCAGTGGCAAGGATGTAATCCTGATTGCCACAAGGAGGATTGTAAGGCCTCCTAAGAAGGGTTCAGCTGCTCAGCGCCCCCGCAGCCGCACACTCACTGCCGTGCACGAGGCAATGCTTGAGGATGTTGTATTACCAGCTGAGATTGTTGGAAAGCGCATTAGGTACCGTGTTGATGGGTCAAAGATTATGAAGGTGTTTTTGGACCCAAAGGAAAGAAACAACACTGAATACAAGTTGGAGACCTTTGCCGCAGTTTACAGGAAGCTTTCAGGCAAAGATGTTGTTTTTGAGTACCCTGTTACTGAAGCTTAG 576 0.4549 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQIDVSGNRKAVLINVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRIRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06944 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vifa1g06944 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vifa1g06944 191 Coils Coil 27 47 - -
Vifa1g06944 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06944 Vifa-Chr1 1071728321 1071729422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06944 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 79.581 9.27e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06944 K02993 - gmx:100527642 353.599