Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06934 ATGTCGAGATCATTGGTTCAACCAGTAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAAAAACACGGCACGCGATTCGAAATCGCTTGTTACCCTAACACCGTCCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCTCATACAGTTTATACAAATGTTTCTAAAGGTGTTCTTGCTAAGTCTAAGGATTTAAACGCTGCTTTCGGTACTGATGATCACTCCAGTATATGCTTAGAGATTTTAAAGAAGGGAGAACTTCAGGTTGCTGGCAAAGAGAGGGAATCAATGTTGTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAAACTTTTAATCCCGAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTTGCTGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAGACGGTGTCCATTGAGGATACGCGCTGCCGCCCCTGAGGAGGAAGTACCTGTCCTTTTAGAAAAGCTGAACGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACTGCTGCTCAGTTATCTGTTGTTTTTGAATTAGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCCCACTCTCTTTATGTGGACGGGGATACACAGGTGGATCAATACAATGATCATGAAGACATGCCTGCACCACTGCCCACAAAAACTCCTGAGTCCGTGCTTGAGCTGAATGATAAACTTCAGAAGCAAACAATTTCAAGTGCAACTAAGCCTACTGAGGTACAACAACCAAAGCAAAACAAATGCAACACATGTGATGCTGCTTTTGAAGATGCTAAGCTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACTAGGCAACTCCCTCCACTCACCGAAGAAGAGTGTGCTGCAGATATGGATTTGTTTGAATCAAAATCTGATTTAAAGGATTATTCATTTTGA 1080 0.4278 MSRSLVQPVGQKRLTNVAVVRLKKHGTRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIRRCPLRIRAAAPEEEVPVLLEKLNEWKATVISKEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTQVDQYNDHEDMPAPLPTKTPESVLELNDKLQKQTISSATKPTEVQQPKQNKCNTCDAAFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECAADMDLFESKSDLKDYSF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06934 359 FunFam SBDS, ribosome maturation factor 3 96 - -
Vifa1g06934 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Vifa1g06934 359 Pfam SBDS protein, domain II 111 170 IPR018978 GO:0042254
Vifa1g06934 359 NCBIfam ribosome assembly factor SBDS 13 232 IPR002140 GO:0042256
Vifa1g06934 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 242 IPR039100 -
Vifa1g06934 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Vifa1g06934 359 Gene3D Classic Zinc Finger 289 348 - -
Vifa1g06934 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Vifa1g06934 359 SUPERFAMILY beta-beta-alpha zinc fingers 293 347 IPR036236 -
Vifa1g06934 359 Gene3D - 100 172 IPR037188 -
Vifa1g06934 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Vifa1g06934 359 FunFam SBDS, ribosome maturation factor 100 172 - -
Vifa1g06934 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Vifa1g06934 359 Gene3D - 1 96 IPR036786 -
Vifa1g06934 359 Gene3D - 174 251 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06934 28 359 C2H2 Transcription Factor Family AT1G43860 56.977 1.35e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06934 K14574 - gmx:100797497 624.394