Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06927 ATGACGAGTCCGTTAAGGGAAGACGAGAAACACGAGCGCGCGATTCGAGCTCTTCTTAGGCTCGAACCCAATCGAACATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAATTGTAGCGGAATACACCGTGAACTTACACATCGTGTGAAATCAGTTTCAATGGCTAACTTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGGAATCAGCGTGCAAGAAATGTTTATTTTAAAGAATGGGATGGACAACAGCATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATAGTACCTCTGACAAACGAGTGAAAAACGGTGGTGACAAAGATGGGTCATATGAAAACAGGAGAGTTGAGGAGGGAGGATCTAAAAGCCCTCCATATGAAGACTCACATGAACCTTGTTATAGTGATAGGTCTAGTCCCGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTAACTATAAGAGAAGTCCCGGTCGTCCTCCAGTTATCAATGATTGGCATCGTGAAGAACGTAGAAAATCAGATGGAGATTATAAGACGGAAAGTAAATCCCCTGTGCAAGTCAGAAATATGGGCTCTTCTAGCCCACCTGTGGGCCGACCCGTTAGAGAATTTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGACCTCCCAAACGGAACAATGGAAAAGCTGCCAATGCCTCAACACTGACACAGAGAACTGCATCCTCCGGTAGCTTGGTATCCAGTAATGAAAGCCAAGTAAATGTTAAGCTTGAGACTACTAAGAACCTTATTGATTTTGATGCTGATCCTATTGCTTCCACAATTCCTCAAGCCCAACAAACTAGCGCGCCTCAACCTGTTTTGCAGCCAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATATTGCTTCTGAGAAGAAAGCAAATCAAAACACCTCAAATTTAAATCCACTTGAATCCGTACTGTCCCAATTGTCTTATTCGGCATCTTTATCTTCTCATGCTTCGGGAGTCCAAGGACCTATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCATCTTTCCCATCCAATGATGCTTCGATGCCATCTTCCGGACTGGAAGTTGTATTACCTCATAATAATGTAGGAAAGTGGGCTAGTTCGCAGCATCAGCAACCAATGTTCTCTGCTGTAAATAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGACAGGGATATCCCAACTCACCAATGCCTCATGCATACCATCGTGCTTCGAAGCCAGCCAATGAGGCTTTTAACAGTATTCTTTCTCAAACTTCTGCGGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTTCTGAAGATCTGTTCACTGCAAAACACTCTTCCTTCTCTGCTCCAGTTCAAGGTTGGCAGGCGGGTCTTCCCCAGGGCAGGGGCATCTCAATGCAATATAATAATAATGTGGCGCCCATACCAAGTTTTTCGGAGCCATCAAGGTCAACAAATCCATTTGATGTCGGCAGCAAACAAACCCCAGATCAAGACCCAGGTTTTCTTTCCATTTCATCCTTGCATAGTGCGATGCCTAGTGTATCGCCTTCACTCCCGATGCTCCCTCCATGCCAGAGTAATCCATTGCTTGCATGGAGTCCACCCCTTCCTAATGTAGGCACTATGCACTCTTCAAGCCGAGGTCTTCAACCAGATGCATGGAATCCACCCCTTCCTAATGTAGGCACTATGCACTCTTCAAGCCGAGGTCTTCAACCAGATGCATGGAATCCACCCCTTCCTAATGTAGGCACTATGCACTCTTCAAGCCAAGGTCTTCAACCAGTTGCATGGAATCCACCCCTGCCATCCTTTCAAGCTGCCCCGCCTAATGTACCATCTTCAGGCACTTTGGACCCTTCAAGCCTGGGTAATCCATCCCATGCTTGGAACCCAACCCTATCGTCACCATATGCGTCATTCCTACCTCCACAAGCACCAACTCATGCATCAGCATTGGGAACAGGGTCTTACAATGGGCAGCAAATGCCAACTAACACGAAATTGCCAAGGCAAGAAGCTGGGAATTTTGGAGCTGAGCGAGACATTTTCGGCTTGTCAAATACAGATCAGCAGCCAACTGGTAAGCCGTCAACCACTCCCACCTCTAAACCCCTTCCCTAA 2265 0.4587 MTSPLREDEKHERAIRALLRLEPNRTCINCNSLGPQYVCTNFWTFVCTNCSGIHRELTHRVKSVSMANFTSQEVTALQEGGNQRARNVYFKEWDGQQHSFPDSDNVNRLRDFIKHVYVDRRFTGDSTSDKRVKNGGDKDGSYENRRVEEGGSKSPPYEDSHEPCYSDRSSPGGRSPGYDQESRQVGNYKRSPGRPPVINDWHREERRKSDGDYKTESKSPVQVRNMGSSSPPVGRPVREFLGENVVPLRISGPPKRNNGKAANASTLTQRTASSGSLVSSNESQVNVKLETTKNLIDFDADPIASTIPQAQQTSAPQPVLQPGNSSDDNWASFDIASEKKANQNTSNLNPLESVLSQLSYSASLSSHASGVQGPIPAGALSFGSLSSFPSNDASMPSSGLEVVLPHNNVGKWASSQHQQPMFSAVNSQPSHVPSVPTGQGYPNSPMPHAYHRASKPANEAFNSILSQTSAVEVKPSGRTELSEDLFTAKHSSFSAPVQGWQAGLPQGRGISMQYNNNVAPIPSFSEPSRSTNPFDVGSKQTPDQDPGFLSISSLHSAMPSVSPSLPMLPPCQSNPLLAWSPPLPNVGTMHSSSRGLQPDAWNPPLPNVGTMHSSSRGLQPDAWNPPLPNVGTMHSSSQGLQPVAWNPPLPSFQAAPPNVPSSGTLDPSSLGNPSHAWNPTLSSPYASFLPPQAPTHASALGTGSYNGQQMPTNTKLPRQEAGNFGAERDIFGLSNTDQQPTGKPSTTPTSKPLP 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06927 754 MobiDBLite consensus disorder prediction 125 286 - -
Vifa1g06927 754 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vifa1g06927 754 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa1g06927 754 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa1g06927 754 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa1g06927 754 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 125 165 - -
Vifa1g06927 754 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vifa1g06927 754 MobiDBLite consensus disorder prediction 629 644 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 303 331 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 173 187 - -
Vifa1g06927 754 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vifa1g06927 754 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vifa1g06927 754 PANTHER ARFGAP/RECO-RELATED 1 585 IPR044820 GO:0005096
Vifa1g06927 754 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 688 754 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 656 676 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 196 217 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 305 331 - -
Vifa1g06927 754 CDD ArfGap_AGFG 12 122 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 697 719 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 610 676 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 523 543 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 732 746 - -
Vifa1g06927 754 MobiDBLite consensus disorder prediction 258 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06927 Vifa-Chr1 1069112892 1069118481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06927 12 122 C2H2 Transcription Factor Family AT4G21160 32.759 5.93e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06927 - - psat:127116115 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06927 1 1069112892 1069118481 Vifa1g06927 1 1069112892 1069118481 ECH