Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06922 ATGACGAAGCTTGAGGAAGAGATGCATCATAATGGGGTGAACTTATCAACCCGAAGAAGCTTTGGAACGAAACTGAAATCTGGGTTGAAAGAAACTTTTTTTCCTGATGATCCGTTTAGACAGATTATGGAAGAGGAAAAACCGTCCCGTAGGTTGATTAAAGGGATACAATATTTTGTACCTATCTTTGAGTGGTTACCAAATTATAATTTGAGATTGTTTTTCTCTGACTTAATTGCTGGTCTCACCATTGCTAGCCTTGCCATTCCTCAAGGCATTAGTTATGCCAAACTCGCAAATCTTCCTCCTCTTGTTGGCCTTTATTCAAGTTTTGTGCCACCATTAGTGTATGCTGTATTTGGGAGTTCAAGGCACATGGCAGTTGGAACAATAGCAGCTGCATCATTACTAATTGGAGACACAATATCAACTGTAGCTGACCATGAAAAGGAACCAGCATTGTATCTTCATTTGATTTTTACAACTACTTTTGTCACTGGTGTTTTTCAGGCTTGTTTGGGTTTTTTCAGGCTTGGAATATTAGTTGATTTCTTCTCCCATTCTACCATTACTGGATTCATGGGAGGAACTGCAGTGATTCTCATCCTTCAACAACTAAAGGGTATTTTGGGATTGAAACATTTTTCAACCAAAACCAATGTTGTATCAGTGATAGAAGCCATCTTCACCAATAGACATGAGATAAGATGGGAAACAACACTTCTTGGAATAATCTTCCTCATTTTCTTGCAATTTACAAGGCAATTGAGGCTTAAAAAGCCAAAACTCTTTTGGGTATCTGCTGTAGCTCCAATGACAACTGTAGTAGTTGGTGGCCTTTTTACATACCTTGTCAAAGGTCAAAATCATGGAATTCAAATTGTGGGACATCTAGATAAAGGATTAAACCCTTGGTCAATTCAATATTTGAATTTTGATAGTAGATATTTACCAGCAGTGTTGAGAGCTGGTTTAATCACTGGAGTTTTATCATTAGCGGAAGGAATAGCCATAGGAAGAAGCTTTTCTGTTACTGATAATACACCTCATGATGGAAACAAAGAGATGATAGCTTTTGGACTTATGAATTTATTTGGTTCTTTTACGTCATGTTACTTGACTAGTGGACCATTTTCCAAGACAGCAGTGAATTATAATGCAGGTTGTAAAAGTGCAATGACAAATGTGGTACAAGCAGTTCTAATGGCTCTTACACTACAATTTTTGGCACCTTTATTTGGCAACACACCACTTGTTGCTCTATCTGCTATTATTGTGTCTGCAATGTTAGGGCTGATAAATTATGATGAAGCAATTTATCTCTTTAAAGTTGATAAATTCGATTTTGTCATTTGCATGAGTGCATTCTTGGGCGTCGCCTTTATAAGCATGGACATGGGCCTTATGATCTCTGTTGGGCTAGGTTTGATTAGAGGACTACTATATTTGGCTAGACCTGCATCATGCAAACTTGGAAAGTTAGCTGATTCTGGTATATACAGAGACGTTGAACATTATTCTAATGCTTCAACGGTTCCAGGAATTTTAGTTTTACAGATTGGTTCTCCTGTTTACTTTTCAAATTCTACTTACCTCAAAGAAAGGATTTTGAGATATGTTAAAAGTGAAGAAAGCTCTTCTGGAAATATCGTAGAATATGTTATACTCGATTTTACAGGAGTAAATTCCATCGACACTACTGGTATTGAAGGATTATTGGAGACAAATAAAGTGTTAGAAAGAAAAGAAATTCAGATGTCACTAGTAAATCCAAGGCTAGAGGTTATGGAGAAGCTAATACTATCAATGTTTGTTGAAAAGATTGGAAAGGAAAAATTCTATCTAAATTTGGAAGATGCAGTGATGGCAAGTCAATTTTCATCAAGAACATCTAAGACAAATAATAATGAAGAGACAGTTTAA 1923 0.364 MTKLEEEMHHNGVNLSTRRSFGTKLKSGLKETFFPDDPFRQIMEEEKPSRRLIKGIQYFVPIFEWLPNYNLRLFFSDLIAGLTIASLAIPQGISYAKLANLPPLVGLYSSFVPPLVYAVFGSSRHMAVGTIAAASLLIGDTISTVADHEKEPALYLHLIFTTTFVTGVFQACLGFFRLGILVDFFSHSTITGFMGGTAVILILQQLKGILGLKHFSTKTNVVSVIEAIFTNRHEIRWETTLLGIIFLIFLQFTRQLRLKKPKLFWVSAVAPMTTVVVGGLFTYLVKGQNHGIQIVGHLDKGLNPWSIQYLNFDSRYLPAVLRAGLITGVLSLAEGIAIGRSFSVTDNTPHDGNKEMIAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGCKSAMTNVVQAVLMALTLQFLAPLFGNTPLVALSAIIVSAMLGLINYDEAIYLFKVDKFDFVICMSAFLGVAFISMDMGLMISVGLGLIRGLLYLARPASCKLGKLADSGIYRDVEHYSNASTVPGILVLQIGSPVYFSNSTYLKERILRYVKSEESSSGNIVEYVILDFTGVNSIDTTGIEGLLETNKVLERKEIQMSLVNPRLEVMEKLILSMFVEKIGKEKFYLNLEDAVMASQFSSRTSKTNNNEETV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06922 640 ProSitePatterns SLC26A transporters signature. 103 124 IPR018045 GO:0008271|GO:0008272
Vifa1g06922 640 PANTHER SULFATE TRANSPORTER 20 630 IPR001902 GO:0016020|GO:0055085
Vifa1g06922 640 CDD STAS_SulP_like_sulfate_transporter 506 617 - -
Vifa1g06922 640 SUPERFAMILY SpoIIaa-like 509 621 IPR036513 -
Vifa1g06922 640 ProSiteProfiles STAS domain profile. 505 624 IPR002645 -
Vifa1g06922 640 Gene3D STAS domain 485 626 IPR036513 -
Vifa1g06922 640 Pfam Sulfate permease family 74 454 IPR011547 GO:0016020
Vifa1g06922 640 Pfam STAS domain 506 620 IPR002645 -
Vifa1g06922 640 NCBIfam sulfate permease 61 620 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06922 Vifa-Chr1 1067209506 1067213320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06922 11 632 Inorganic Solute Cotransporters AT5G19600 61.576 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06922 K17471 - gmx:100789107 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06922 1 1067209506 1067213320 Vifa1g06922 1 1067209506 1067213320 ECH