Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06921 ATGGACGACATGGAAGATGACGCTAGGTACCCATCAAAGGGATACCCATTGCGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACCTACAGTATCATCGCTACGATGATCCAGAAGATAACAGCATCGACGATGTTTACGAAGACGAAGAACCCGAAGAATTCGATGATTACAGTATAGGTGAAAACGGAATTGAAAATGGGTATGTTGGTAATTTTGAAGGAAACGAGGGGTTCATTAGGAAGAAGAGAAAATTACGAAGCGGTGGCGGTGGTGGTGGTTCGTCTGTTTCGAATTATGAATTGGTTCCGCGTGGTAAATTCTATGTTAATCGCGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTTCTTCTTCTGGTTCTGAGGAATGGACAGAACATGCTACTTTTGTGTTGTTGGAGATTTGGGGAGAAAAGTTTCTTCAAATTGGGAGAAACAGTTTGAGATCAGAGGAATGGCATGAGGTTTCTGAGAAAGTTTCGGAAGAGTTGAAAGTTGAAAGGGATGTTGCACAGTGTAGGAGTGTTTTGGATAAGGTGAAAAGAAGGTACAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTGGGTTTAAATTCTTGCAAGTGGCCGTTTTTCAAGAGGATGGATATGTTGATGTCTTCGTCTGCGAGACAAGAATATGGACTTGCTTGTGGTGTTGATTCGGGGGAGTATGTGTTTATGAATACGAGGGTTTATTTGAATAGGTCGAATGGTTTTGATGAAATGAGGGATAGTCCTGGTGAGTCTGAGGCTTCTGAGGATGATTACGGAGAAGATTTCGATGGAGATGATGATGATGATGAGGAGGAGGAGGAAGATGAGGTGGATAAAGAAGAGGAGGAGGCTTCGTATAGGGTGTTGGCTGATTCTATTCAGAAGTTTGGGAAGATTTATGAGAAGATTGAGAATACGAAGAGGCAACAGATGATGGAGTTGGAGAAGATGAGGGCGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGAAAGGGCTCAGGATGAAATATCGAAAATACAGGTAGGAGACGATGGTGATGATGATGAGGAGGACACGGATACTTCTGCAGATAATCTCAGTGAATAA 1143 0.4287 MDDMEDDARYPSKGYPLRRKNPNLRQKHPIRNLQYHRYDDPEDNSIDDVYEDEEPEEFDDYSIGENGIENGYVGNFEGNEGFIRKKRKLRSGGGGGGSSVSNYELVPRGKFYVNRGGGGGGGGGGSSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVSEKVSEELKVERDVAQCRSVLDKVKRRYKKEKSRMDEMGLGLNSCKWPFFKRMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESEASEDDYGEDFDGDDDDDEEEEEDEVDKEEEEASYRVLADSIQKFGKIYEKIENTKRQQMMELEKMRADFNRELELQKKQILERAQDEISKIQVGDDGDDDEEDTDTSADNLSE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06921 380 MobiDBLite consensus disorder prediction 254 301 - -
Vifa1g06921 380 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 108 360 IPR044823 -
Vifa1g06921 380 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g06921 380 Coils Coil 315 357 - -
Vifa1g06921 380 MobiDBLite consensus disorder prediction 360 380 - -
Vifa1g06921 380 MobiDBLite consensus disorder prediction 351 380 - -
Vifa1g06921 380 Gene3D - 133 195 - -
Vifa1g06921 380 MobiDBLite consensus disorder prediction 268 296 - -
Vifa1g06921 380 Pfam Myb/SANT-like DNA-binding domain 131 220 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06921 Vifa-Chr1 1066216011 1066217153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06921 261 359 Trihelix Transcription Factor Family AT3G14180 38.235 3.43e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g06921 Myb_DNA-bind_4 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06921 - - ccaj:109813475 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06921 1 1066216011 1066217153 Vifa1g06921 1 1066216011 1066217153 ECH