Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06919 ATGAACCATTACCAACAAGACCAAATGATGCTCATTTCTCAGCTATTTCCTGCAAGTGCGCATGCTTACACTGATACAGTTTCTCAACAAGTGGAGAAGAAGCCAAGACGTAAACGTAACAAGAAGAGTAAAGGCGGAGAAAACACTGCAAACGAAATGAACAAAAAGAGGAAGCTTAGTGAAAAACAAATGATTTTGTTGGAACAACACTTTGGGAATGAACACAAACTTGAGTCTGAAAGAAAAGATAAACTGGCAATGGAACTTGGTTTGGATCCCAGACAAGTTGCTGTCTGGTTTCAAAACCGAAGAGCACGTTGGAAGAACAAGAAACTTGAAGAAGAGTACACAAATTTGAAAAAGTTCCATGAATCTACCATGCTTGAGAAATGTTTGCTTGAAACTGAGGTATTGAAATTGAGGGAACAGCTTTCTGAAGCTGAGAAGGAAATTCAAAGACTTCGAGAGCATGTTGAAGTGGTTCCAACTAACAGTTCAAGCACTTCATCAATGTCTCAATCAATGGAAGTAATGGAACCACCGCCATTTTTTGATGAATTTGAAGTGGATAATGTATATAATGATAATGTGTTTTTGATGCCTTACTTCAATGGCATCGAATGGACATATATCTAG 636 0.3789 MNHYQQDQMMLISQLFPASAHAYTDTVSQQVEKKPRRKRNKKSKGGENTANEMNKKRKLSEKQMILLEQHFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYTNLKKFHESTMLEKCLLETEVLKLREQLSEAEKEIQRLREHVEVVPTNSSSTSSMSQSMEVMEPPPFFDEFEVDNVYNDNVFLMPYFNGIEWTYI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06919 211 SMART HOX_1 53 114 IPR001356 GO:0003677
Vifa1g06919 211 Coils Coil 137 157 - -
Vifa1g06919 211 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Vifa1g06919 211 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Vifa1g06919 211 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Vifa1g06919 211 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Vifa1g06919 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 169 IPR045224 GO:0003700
Vifa1g06919 211 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Vifa1g06919 211 MobiDBLite consensus disorder prediction 26 57 - -
Vifa1g06919 211 CDD homeodomain 55 111 IPR001356 GO:0003677
Vifa1g06919 211 Gene3D - 46 119 - -
Vifa1g06919 211 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Vifa1g06919 211 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06919 Vifa-Chr1 1066141168 1066142553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06919 9 208 Homeobox Transcription Factor Family AT2G18550 51.429 2.38e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g06919 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06919 K09338 - gmx:100809616 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06919 1 1066141168 1066142553 Vifa1g06919 1 1066141168 1066142553 ECH