Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06917 ATGCCAACACGAACAACAGGAGCGATCGCACAAGACTGGGAACCAGTCATCCTCCACAAATCAAAACCCAAGGCACAAGATCTCCGCAACCCGAAAGCAGTGAACCAAGCCCTTCGAACCGGAGCAGAAGTCCTGACGCTAAAAAAAAACACCGCCGGTTCGAACAAGAAAAGCGCCGGTCCGGTTGTGAGCGCGAGGAAGCTAGACGAAGCGGCTGAACCGGCGGCGTTGGAGCGGGTCGGTGGGGAAGTGAGGCACACGATACAGAAAGCGCGTTTGGATAAGAAGATGAGTCAAGCTGAGCTGGCGAAACAGATTAATGAGAGGGTGCAGGTTGTTCAGGAGTATGAGAATGGGAAAGCTGTTCCTAATCAGCTTGTTTTGGGGAAAATGGAGAGGGTTCTTGGGGTTAAGCTTAGGGGTAAAATTGGAAAATGA 438 0.516 MPTRTTGAIAQDWEPVILHKSKPKAQDLRNPKAVNQALRTGAEVLTLKKNTAGSNKKSAGPVVSARKLDEAAEPAALERVGGEVRHTIQKARLDKKMSQAELAKQINERVQVVQEYENGKAVPNQLVLGKMERVLGVKLRGKIGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06917 145 CDD HTH_XRE 88 139 IPR001387 -
Vifa1g06917 145 Gene3D - 72 145 IPR010982 GO:0003677
Vifa1g06917 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Vifa1g06917 145 SMART mbf_short4 87 142 IPR001387 -
Vifa1g06917 145 FunFam Multiprotein bridging factor 1 72 145 - -
Vifa1g06917 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Vifa1g06917 145 Coils Coil 88 108 - -
Vifa1g06917 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 142 - -
Vifa1g06917 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Vifa1g06917 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06917 Vifa-Chr1 1065977768 1065978205 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vifa1g06917 MBF1 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06917 K03627 - twl:119996545 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06917 1 1065977768 1065978205 Vifa1g06917 1 1065977768 1065978205 ECH