Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06915 ATGTCTTCTCTCTTCTCCAATGGCAAACCCAATTTCTCTTCGGAGATTCCCACCATCAAGTTCACCAAACTCTTCATCAATGGACAATTTGTTGATTCTCTTTCAGGAAAAGAATTTGAGACAATAGATCCAAGAACTGGAGAGTTAATAGCAAAGATTGCGGAGGGAAGAAAGGAAGATATTGATGTTGCTGTGAAAGCGGCACGTGTCGCTTTCGATGACGGCCCATGGCCTAGAATGCCCGGTGCGGAAAGAGCAAAAATCTTGCTGAAATGGGCAGATTTAATTGAACAAAACATAGAAGAGATAGCAGCACTAGACACCATAGATGCTGGAAAATTGTACAATTTCTGCAAAGCTGTTGACATACCTGGAGTAGCAAACACACTCCGTTTCTACTCCGGTGCTGCTGATAAAATTCATGGCGAGGTTTTAAAACCTGCGCGCGAGTTGCATGCATATACTTTGATGGAACCGATTGGTGTTGTTGGACACATAATTCCTTGGAATTTTCCTAGTACCATGTTTGTTGCTAAGGTTGCTCCGTCTTTGGCTGCTGGTTGTACTATGGTTCTTAAACCTGCTGAACAAACACCTCTTTCGGCTTTGTTTTATGCTCATCTCAGTAAACAGGCTGGAATTCCGGACGGAGTACTCAATGTAGTACCTGGATTTGGCGCAACTGCGGGAGCTGCAATAAGTTCACACATGGACATTGATAAGGTTAGTTTTACCGGTTCAACAGAAGTAGGACGCGAAATAATGATATCTGCGGCTAGAAGTAATTTGAAACCGGTTTCATTGGAGTTAGGAGGAAAATCACCTCTGTTGATTTTTGATGATGCTGATGTTGATAAAGCTGCTGAACTTGCTCTCATTGGCATCCTATTTAATAAGGGAGAAATTTGTGTTGCTGGTTCTCGTGTGTTTGTTCAAGAAGGAATCTATGACGAATTTGAGAAGAAGTTGGTGGAGAAAGCAAAAGCTTGGATTGTTGGGGATCCTTTTGATCCTAAAGTTCAACAAGGTCCTCAGGTTGATAAGAAGCAATTTGAAAAAATTCTTTCCTATATTGAACAAGGAAAGAAAGAAGGTGCAACCCTTTTGACAGGTGGTAAAAATATTGGAGACAAAGGTTACTATATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATAGCACAAGATGAAATATTTGGACCTGTCATGGCACTAATGAAGTTCAAGACTATTGAGGAAGCAATTAAAAGTGCAAACAATACAAGATATGGTTTAGCAGCAGGAATTGTGACAAAGAATTTGGATATAGCAAACACTGTGTCGAGATCGATTCGTGCTGGAATTATTTGGATTAATTGCTACTTTGCATTTGGAAATGACATTCCTTATGGAGGTTACAAGATGAGTGGATTTGGAAGAGACTTTGGATTGGAATCATTACATAAGTATTTACAAGTTAAATCTGTTGTTACTCCCATTTACAATTCTCCCTGGCTTTGA 1509 0.3996 MSSLFSNGKPNFSSEIPTIKFTKLFINGQFVDSLSGKEFETIDPRTGELIAKIAEGRKEDIDVAVKAARVAFDDGPWPRMPGAERAKILLKWADLIEQNIEEIAALDTIDAGKLYNFCKAVDIPGVANTLRFYSGAADKIHGEVLKPARELHAYTLMEPIGVVGHIIPWNFPSTMFVAKVAPSLAAGCTMVLKPAEQTPLSALFYAHLSKQAGIPDGVLNVVPGFGATAGAAISSHMDIDKVSFTGSTEVGREIMISAARSNLKPVSLELGGKSPLLIFDDADVDKAAELALIGILFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWIVGDPFDPKVQQGPQVDKKQFEKILSYIEQGKKEGATLLTGGKNIGDKGYYIEPTIFSNVKEDMLIAQDEIFGPVMALMKFKTIEEAIKSANNTRYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFGNDIPYGGYKMSGFGRDFGLESLHKYLQVKSVVTPIYNSPWL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06915 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
Vifa1g06915 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Vifa1g06915 502 FunFam Aldehyde dehydrogenase3 272 461 - -
Vifa1g06915 502 SUPERFAMILY ALDH-like 17 498 IPR016161 GO:0016491
Vifa1g06915 502 Pfam Aldehyde dehydrogenase family 31 492 IPR015590 GO:0016491
Vifa1g06915 502 FunFam Aldehyde dehydrogenase, putative 464 490 - -
Vifa1g06915 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491
Vifa1g06915 502 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 26 289 - -
Vifa1g06915 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 13 492 - -
Vifa1g06915 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06915 Vifa-Chr1 1065836387 1065843002 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06915 7 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.545 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06915 K12355 - gmx:100783920 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06915 1 1065836387 1065843002 Vifa1g06915 1 1065836387 1065843002 PCT