Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06914 ATGGCTAGTGAATATCACCAGCTCTCACAGTCACAGTCAGACACAAACACTATGTTACTTTTCCAAATGTCACTCGCCTGTTCCTCGAAGAATGTCGAAAACAGGTCAAGTGATAGTATTGTTTCTGATTTTGTCTTTGATATTGATCCTAGTTTGTTGCTGGATTCTGATAAACTATTCATTGATGAGATCATAGGAGAAGGCTCAGATTCCATTGTATACCGAGGATGGTATGAAGATCACCCGGTGGCCATTAAAGTCATACATCCGGAAACAACAAAGGATGCTCCTTCTGAATCTAAGCTCAAATTTGAGAGAGAGGTGAAGCTTTTATCTAAGATTCAACATACAAATGTTGTCAAGTTTATTGGAGCCACTGTGAAACCATCGATGACGATAATCACAGAACTACTAGAAGGCGGTTCACTTCAGAAAACCATGAAGAGTATCTATCCATTAACTTTTTCATTGGAACAGTGTTTAAGTTATGCTCTTGATATTTCACAAGCTATGGAGTATTTGCACTCAAATGGCATCATTCACCGTGATCTCAAACCTGGTAATTTACTACTTACAAAAGACAAGAATAATATTAAGCTTGCTGATTTTGGGATAGCTAGAGAGAATATATGTGATGAGATGACTTGTGAAGCTGGTACATATAGATATATGGCTCCTGAGATTTTAAGCAAAGATCCACTTCCAAAAGGAGCAAAAAAAAGCTATGATCACAAAGCTGATGTGTACAGTTTTGCAATGGTTCTTTGGTGTATGATCAAAAACCAAACTCCATTTAAAGATAGAAAAGATTTCATGGCTGCATATGCTACCATAAACAATATGAGGCCAAGTTTGGATGATTTTCCTGAAGTAATAACTCCCTTGGTGCAATCTTGTTGGATGGAAGATCCAAAACTCAGACCAGAATTCAAGGAAATCACTGGAATGCTGATAAAGATTCTTCATGATATTTACAGAGAAAAGATTAATGCACTTGCAAGCTTAAAAAGGTTTGAAGAAGCTATTAACAAAAGTGAAGAAGAAATATCAAGGGCACAACATGCTCCAACTAGCTTTGAATCAACTAATGAGAATGAAAACATCTCCAAACAAGAGAGTGAGACTGTAAGACCTAATGGAGAAACAGATGGTGATTCTCAGAAGAAGCCAAAAAAGAAAAATAAGATCAAACGCTTTTTTTCTTTTTTTCGTAGTTGCATTTCCTTTTGA 1230 0.3642 MASEYHQLSQSQSDTNTMLLFQMSLACSSKNVENRSSDSIVSDFVFDIDPSLLLDSDKLFIDEIIGEGSDSIVYRGWYEDHPVAIKVIHPETTKDAPSESKLKFEREVKLLSKIQHTNVVKFIGATVKPSMTIITELLEGGSLQKTMKSIYPLTFSLEQCLSYALDISQAMEYLHSNGIIHRDLKPGNLLLTKDKNNIKLADFGIARENICDEMTCEAGTYRYMAPEILSKDPLPKGAKKSYDHKADVYSFAMVLWCMIKNQTPFKDRKDFMAAYATINNMRPSLDDFPEVITPLVQSCWMEDPKLRPEFKEITGMLIKILHDIYREKINALASLKRFEEAINKSEEEISRAQHAPTSFESTNENENISKQESETVRPNGETDGDSQKKPKKKNKIKRFFSFFRSCISF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06914 409 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06914 409 MobiDBLite consensus disorder prediction 376 390 - -
Vifa1g06914 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vifa1g06914 409 CDD STKc_MAP3K-like 65 317 - -
Vifa1g06914 409 MobiDBLite consensus disorder prediction 354 375 - -
Vifa1g06914 409 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 326 - -
Vifa1g06914 409 SUPERFAMILY Protein kinase-like (PK-like) 53 329 IPR011009 -
Vifa1g06914 409 Gene3D Phosphorylase Kinase; domain 1 49 139 - -
Vifa1g06914 409 Pfam Protein kinase domain 62 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06914 409 PRINTS Tyrosine kinase catalytic domain signature 288 310 IPR001245 GO:0004672|GO:0006468
Vifa1g06914 409 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vifa1g06914 409 PRINTS Tyrosine kinase catalytic domain signature 246 268 IPR001245 GO:0004672|GO:0006468
Vifa1g06914 409 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vifa1g06914 409 SMART serkin_6 59 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06914 409 MobiDBLite consensus disorder prediction 348 393 - -
Vifa1g06914 409 Gene3D Transferase(Phosphotransferase) domain 1 140 390 - -
Vifa1g06914 409 Coils Coil 328 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06914 Vifa-Chr1 1065572512 1065574196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06914 44 324 MAP Kinase Kinase Kinase AT5G66710 51.773 1.24e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06914 Pkinase 4.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06914 - K04427 gsj:114390113 395.201