Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06912 ATGGCACTATCACTCTCAAGCACCATGCTCCTTTACAAATTGTCACTCGCTTTTTCTTCACAGAATGTTGAAAACCGGACAAGTGACAATGAAGGTTCTGATAGTGGTGATGATATTGTGTTTGATATTGATCCTAGTTTGCTTGTGGATTGTGAGAAAATACTCATCGGTGACATGATTGGAAAAGGCTCGTACTCTCTTGTATTCAAAGGATGGTATGAAGGTCATCCTATAGCCATTAAGGCTATACACCCACACTGTAAAGCCAAATTTGAGAGAGAGGTGAAGCTTTTATCTAAGATTCAACATACAAATGTTGTCAAGTTTATTGGAGCTTCTGTGAAACCATCTATGGTGATAATAATAGAACTTTTAGAAGGTGGTTCACTTCAGAAAACCATGAATAACATCTATCCAATAACATTTTCATTGGAACAATGTTTGAGTTATGCTCTTGATATTTCACAAGCTATGGAGTATTTGCATTCAAATGGCATTATTCACCGTGATCTTAAGCCTGGTAATTTACTACTTACAAAGGACAAGAATAATATTAAGCTTGCTGATTTTGGGATAGCTAGAGAGAATATATGTGATGAGATGACTTGTGAAGCTGGTACATATAGATATATGGCTCCTGAGATTTTAAGCAAAGATCCACTTCCAAAAGGAGTAAAGAAAAGCTATGATCACAAAGCAGATGTTTTTAGTTTTGCAATGGTTCTTTGGTCTATGATCAAAAATCAAGTTCCATTTAAAGATAGGGCTGACTTAATGGCTGCATATGATGCATTACACAATTTGAGACCATGTTTGGATGATTTTCCAGAAGATATAACTCTCCTGCTTCAATCTTGTTGGATGGAAGATCCAAAACTTAGACCAGAATTCAAGGAAATCAGTGAAATTCTGATAAGGATTCTCCATAATATATACACAAGAAAGATTAATGGACTTGCCAGCATAGAAGTTGTTGGAGAAGTTGATAGCAAAAGTGAGGAAGAATTATCAAGGGCACAACATACTCCAACTAGCTTTGAATTCAAACATGAGAATGAGACTGTAAAACCTAATGGAGAAACTGATGGTGAACCTCAGAGTGGAACAAAGACATCATTCTCTAACTTGGTGGAAAAGAAGCCCAAAAAGAAGAGTAAGATCAAGCGTTTTTTTTCTTCCTGTAGTTGCATTGCCTTCTGA 1200 0.3625 MALSLSSTMLLYKLSLAFSSQNVENRTSDNEGSDSGDDIVFDIDPSLLVDCEKILIGDMIGKGSYSLVFKGWYEGHPIAIKAIHPHCKAKFEREVKLLSKIQHTNVVKFIGASVKPSMVIIIELLEGGSLQKTMNNIYPITFSLEQCLSYALDISQAMEYLHSNGIIHRDLKPGNLLLTKDKNNIKLADFGIARENICDEMTCEAGTYRYMAPEILSKDPLPKGVKKSYDHKADVFSFAMVLWSMIKNQVPFKDRADLMAAYDALHNLRPCLDDFPEDITLLLQSCWMEDPKLRPEFKEISEILIRILHNIYTRKINGLASIEVVGEVDSKSEEELSRAQHTPTSFEFKHENETVKPNGETDGEPQSGTKTSFSNLVEKKPKKKSKIKRFFSSCSCIAF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06912 399 ProSiteProfiles Protein kinase domain profile. 54 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06912 399 MobiDBLite consensus disorder prediction 334 358 - -
Vifa1g06912 399 Gene3D Transferase(Phosphotransferase) domain 1 127 344 - -
Vifa1g06912 399 Gene3D Phosphorylase Kinase; domain 1 42 126 - -
Vifa1g06912 399 PRINTS Tyrosine kinase catalytic domain signature 233 255 IPR001245 GO:0004672|GO:0006468
Vifa1g06912 399 PRINTS Tyrosine kinase catalytic domain signature 122 135 IPR001245 GO:0004672|GO:0006468
Vifa1g06912 399 PRINTS Tyrosine kinase catalytic domain signature 160 178 IPR001245 GO:0004672|GO:0006468
Vifa1g06912 399 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672|GO:0006468
Vifa1g06912 399 Pfam Protein kinase domain 58 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06912 399 MobiDBLite consensus disorder prediction 359 375 - -
Vifa1g06912 399 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Vifa1g06912 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vifa1g06912 399 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 311 - -
Vifa1g06912 399 SUPERFAMILY Protein kinase-like (PK-like) 48 314 IPR011009 -
Vifa1g06912 399 SMART serkin_6 54 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06912 399 MobiDBLite consensus disorder prediction 334 385 - -
Vifa1g06912 399 CDD STKc_MAP3K-like 60 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06912 Vifa-Chr1 1065146266 1065149922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06912 37 311 MAP Kinase Kinase Kinase AT5G66710 48.944 3.45e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06912 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06912 - K04427 gsj:114390113 382.874