Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06901 ATGCCGCGATCAAATTCAGGAGTTCATCATCACCAGCGTCAAAGCTCTGATAACTTCATCCTCGATGCAAATTATCAGGGAAGATGGTTTCATCCTTCAGCTTTTGCACATGAATTTGGAACGCGATCTTCGAGTTTGAGGAAGAGCGAGGATGATAGTGTGTTCATGAGTGGCTTGCTTGATTTGCATTCCTTTGATACTGAGCTTTTACCTGAGGGACAATATTTTGATGAGTCTGAGCCGATTTTCCCCGGAAACAAACTCGCACCAAGATCTCGGGGCTTGACTGAGAGCAATATTCTTAGAAGTTTCTCAGCTGATAAAGAGAGAGCTAACAATGTTGCTAAGATCAAAGTTGCAGTTAGGAAGAGACCACTGAATAAGAAAGAAAAAGCAAAGAAAGAAGAAGATATCATTACAATAAATTCAAATTCTCTCACAGTACACGAAAGAAAACTCAAGGTTGACTTGACAGGATATGTTGAGAAACACGGGTTCTTTTTTGATGCTGTGCTGGATGAAGATGTTTCAAATGTTGAAGTGTATGCTGAGACTGTAGAGCCCATAGTTCCATTGATATTCCAACGAACAAAAGCAACTTGCTTTGCTTATGGCCAAACCGGGAGTGGGAAAACGTATACTATGCAACCATTGCCTCTCAAAGCATCCCAAGATATTTTAAGATTAATGCACCACACATACCGGAGCCAAGGTTTCCAATTATACTTTAGTTTTTTTGAAATATATGGGGGGAAACTGTTTGATCTTCTCAATGATAGAAAAAAACTTTGCATGAGGGAGGATGGTAAACAGCAGGTTTGCATTGTTGGCTTGCAGGAGTACAGAGTATTTGAAGTTGAAACAATCAAGCAATTTATTGAGAAAGGAAATGCTTCAAGAAGTACTGGTACAACCGGTGCAAATGAGGAATCTTCTCGATCGCATGCTATAATTCAACTTGTTATCAAGAGATCAGCTGATGGGTCTGAATCAAAGCCCACTCGAGTCGTAGGCAAACTATCTTTCATAGATCTGGCTGGAAGTGAACGGGGTGCAGATACTACAGATAATGATAAGCAGACTAGAATTGAAGGGGCTGAAATTAATAAAAGCTTACTTGCACTGAAAGAATGCATTAGAGCCCTAGACAGTGACCAAGGTCATATCCCTTTCAGAGGAAGTAAATTGACTGAAGTTCTACGAGACTCTTTCGTTGGTGATTCACGGACTGTAATGATATCTTGCATTTCTCCAAGCTCAGGTTCATGTGAGCATACTCTCAACACATTAAGATATGCTGACAGGGTAAAGAGCTTGTCAAAGGGGAACAGCTCCAGAAAGGATTCACTTTCTTTATCCAACCTTAGAGACTCAACTGTATTGCCGATTTTACCTAATGATGATATCGATGAAGATGAAATAACATATGTTTCCGGTGAGAGGAATCAATTTGGATGGTCCAAACAGCCTCAAAGAGAACCCTCGCCTCCAAATAAGGTGAACTGTGTTGCAAGTGGTAGGACAGAGGGAAATTTGGCACCGTCTGTGTACTCTGACCAACAAAGAGGTATTCAAAATGACAGAGCTGAGAAGGAAAATGATTGCCTAGTACCAACATATGGACAAGACAGAACAAGAAAAGCAAGCAAGAGGGTAGATAACAACCAGTTATCTACCGTGGAAGACAAAAGGAAGACAGGCTCTCGTGCTAAACATGCAAATCTATCACATGTTGAGAATAGATATTCTGATCCTGATGATGATTTTAATGCTCTGCTGAAGGATGAGGAAGAACTTGTAACTGCTCACCGCAGACAAGTGGAGGAAACGGTAGATATTGTTAGGGAGGAGATGAATTTACTCTTTGAAGCTGATCAACCAGGAAATCAATTGGATGCTTACATTTCCAAATTGAATACCATTTTGTCTCAAAAAGCGGCAGGAATATTTCAACTGCAGACTCAGTTGGCTCAATTCCAGAGACGTTTAAACGAGTACAACATTTACTCATCCTCGGGTGACTGA 2025 0.4064 MPRSNSGVHHHQRQSSDNFILDANYQGRWFHPSAFAHEFGTRSSSLRKSEDDSVFMSGLLDLHSFDTELLPEGQYFDESEPIFPGNKLAPRSRGLTESNILRSFSADKERANNVAKIKVAVRKRPLNKKEKAKKEEDIITINSNSLTVHERKLKVDLTGYVEKHGFFFDAVLDEDVSNVEVYAETVEPIVPLIFQRTKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYRSQGFQLYFSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYRVFEVETIKQFIEKGNASRSTGTTGANEESSRSHAIIQLVIKRSADGSESKPTRVVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDSDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNSSRKDSLSLSNLRDSTVLPILPNDDIDEDEITYVSGERNQFGWSKQPQREPSPPNKVNCVASGRTEGNLAPSVYSDQQRGIQNDRAEKENDCLVPTYGQDRTRKASKRVDNNQLSTVEDKRKTGSRAKHANLSHVENRYSDPDDDFNALLKDEEELVTAHRRQVEETVDIVREEMNLLFEADQPGNQLDAYISKLNTILSQKAAGIFQLQTQLAQFQRRLNEYNIYSSSGD 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06901 674 Pfam Kinesin motor domain 122 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 439 IPR027417 -
Vifa1g06901 674 CDD KISc_KIF2_like 116 437 - -
Vifa1g06901 674 Gene3D Kinesin motor domain 96 442 IPR036961 -
Vifa1g06901 674 PANTHER KINESIN-RELATED PROTEIN 6 31 670 IPR027640 GO:0003777|GO:0007018
Vifa1g06901 674 PRINTS Kinesin heavy chain signature 196 217 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 PRINTS Kinesin heavy chain signature 339 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 PRINTS Kinesin heavy chain signature 305 322 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 PRINTS Kinesin heavy chain signature 389 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 ProSiteProfiles Kinesin motor domain profile. 116 439 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 FunFam Kinesin-like protein 97 442 - -
Vifa1g06901 674 SMART kinesin_4 114 445 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g06901 674 ProSitePatterns Kinesin motor domain signature. 338 349 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06901 Vifa-Chr1 1063707108 1063724763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06901 115 439 Calmodulin-binding Proteins AT5G65930 34.925 2.09e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06901 K10393 - gmx:100775562 1043.49