Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06888 ATGACGAGTCCGTTAAGGGAAGACGAGAAACACGAGCGCGCGATTCGAGCTCTTCTTAGGCTCGAACCCAATCGAACATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAGATTTCTGGACGTTTGTTTGCACTAATTGTAGCGGAATACACCGTGAACTTACACATCGTGTGAAATCAGTTTCAATGGCTAACTTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGGAATCAGCGTGCAAGAAATGTTTATTTTAAAGAATGGGATGGACAACAGCATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATACTACCTCTGACAAACGAGTGAAAAACGGTGGTGACAAAGATGGGTCATATGAAAACAGGAGAGTTGAGGAGGGAGGATCTAAAAGCCCTCCATATGAAGACTCACATGAACCTTGTTATAGTGATAGGTCTAGTCCCGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTAACTATAAGAGAAGTCTCGGTCGTCCTCCAGTTATCAATGATTGGCATCGTGAAGAACGTAGAAAATCAGATGGAGATTATAAGACGGAAAGTAAATCCCCTGTGCAAGTCAGAAATATGGGATCTTCTAGCCCACCTGTGGGCCGACCCGTTAGAGAATTTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGACCTCCCAAACGGAACAATGGAAAAGCTGCCAATGCCTCAACACTGACACAGAGAACTGCATCCTCCGGTAGCTTGGTATCCAGTAATGAAAGCCAAGTAAATATTAAGCTTGAGACTACTAAGAACCTTATTGATTTTGATGCTGATCCTATTGCTTCCACAATTCCTCAAGCCCAACAAACTAGCGCGCCTCAACCTGTTTTGCAGCCAGGAAATTCTATCCAAGGACCTATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCATCTTTCCCATCCAATGATGCTTCGATGCCATCTTCCGGACTGGAAGTTGTATTACCTCATAATAATGTAGGAAAGTGGGCTAGTTCGCAGCATCAACAACCAATGTTCTCTGCTGTAAATAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGACAGGGATATCCCAACTCACCAATGCCTCATGCATACCATCGTGCTTCGAAGCCAGCCAATGAGGCTTTTAACAGTATTCTTTCTCAAACTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTTCTGAAGATCTGTTCACTGCAAAACACTTTTCCTTCTCTGCTCCAGTTCAAGGTTGGCAGGCGGGTCTTCCCCAGGGCAGGGGCATCTCAATGCAATATAATAATAATGTGGCGGTACTGTTACAATCCAGAATGATTAGCTTACCAGATTATCTTACTATGCATTTAGTTTTTATGCTCCAAACAGCTTATGATTAA 1506 0.4336 MTSPLREDEKHERAIRALLRLEPNRTCINCNSLGPQYVCTDFWTFVCTNCSGIHRELTHRVKSVSMANFTSQEVTALQEGGNQRARNVYFKEWDGQQHSFPDSDNVNRLRDFIKHVYVDRRFTGDTTSDKRVKNGGDKDGSYENRRVEEGGSKSPPYEDSHEPCYSDRSSPGGRSPGYDQESRQVGNYKRSLGRPPVINDWHREERRKSDGDYKTESKSPVQVRNMGSSSPPVGRPVREFLGENVVPLRISGPPKRNNGKAANASTLTQRTASSGSLVSSNESQVNIKLETTKNLIDFDADPIASTIPQAQQTSAPQPVLQPGNSIQGPIPAGALSFGSLSSFPSNDASMPSSGLEVVLPHNNVGKWASSQHQQPMFSAVNSQPSHVPSVPTGQGYPNSPMPHAYHRASKPANEAFNSILSQTSAVEVKPSGRTELSEDLFTAKHFSFSAPVQGWQAGLPQGRGISMQYNNNVAVLLQSRMISLPDYLTMHLVFMLQTAYD 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06888 501 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vifa1g06888 501 MobiDBLite consensus disorder prediction 309 324 - -
Vifa1g06888 501 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vifa1g06888 501 MobiDBLite consensus disorder prediction 125 165 - -
Vifa1g06888 501 MobiDBLite consensus disorder prediction 309 331 - -
Vifa1g06888 501 MobiDBLite consensus disorder prediction 173 187 - -
Vifa1g06888 501 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vifa1g06888 501 MobiDBLite consensus disorder prediction 258 283 - -
Vifa1g06888 501 MobiDBLite consensus disorder prediction 196 217 - -
Vifa1g06888 501 CDD ArfGap_AGFG 12 122 - -
Vifa1g06888 501 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Vifa1g06888 501 PANTHER ARFGAP/RECO-RELATED 1 390 IPR044820 GO:0005096
Vifa1g06888 501 MobiDBLite consensus disorder prediction 125 283 - -
Vifa1g06888 501 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Vifa1g06888 501 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vifa1g06888 501 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa1g06888 501 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa1g06888 501 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06888 Vifa-Chr1 1062057230 1062061358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06888 12 122 C2H2 Transcription Factor Family AT4G21160 31.897 9.07e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06888 - - psat:127116115 773.467