Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06887 ATGTCTTCCGCTAATAACTCCTCGCCGGATAACTCTTCACCAGATAATTCCACACCTGATAATAGCACCCCTGATGATGCTGATAACTCTTCTTCACCACCAAAATCCCCACCACCACAATCTCCACCACCACAATCCCCACCACCACAATCTCCACCTCCACAATCCCCACCACCATCACCACCTGCACAATCCTCTCCTCCTCCTTCACAATCAACTCCTAATCAACCACCACCATCACCTTCACAATCAACTCCTAATCAACCACCACCATCACCTTCACAATCACAATCTTCTCCTCCACCACCAACATCAAACAATCCATCCCCATCATCACCAAATTCATCCTTTAACCCACCAACGCAGGCAGGAGGCCGTTCTTCACCAGGCTCCCCTGGATCCGGAAATTCATCGTCGTCCCAACAAAAATCATTACCAAATTCATCACCCGGGCGTTCCAATGGTAATTACGACATCAATAATAGTGATACCACTAAGGCAATAATTGGAGCAATGATTGGGGTGGGAGGTGTTCTTCTCATTATGGTCATCGCATGCATTTTTTTCTCCCGGAAGAAAAAAAGAAAGCAAATGTACTATTATGGAGATCATCCATCTCATGGAAAAGGGAATAACAACTATTACAACAATGGGCCACCCCAAAATTATTATGGAGGTCCGCACGGGGAACACGTTGTTAGGCTACAAAATGGAATGGGTCCCAACGGAATGGGTCCTAACGGAATGGGTCCTAACGGAATGGGTGGAATGGGTCCTAATGGTGGCGGCGGCGGTGGTGGTGGTTGGGGTGCAGCTCCTATGATGATGAACAGTGCAGACATGAGCTCAAATTACTCTGGCGGGCCACCAGCTTTGCCTCCTCCATCACCAAGTCTTGCTTTAGGGCTTAAAGGAGGCACATTCACTTATGAGGAATTGGCAGCCGCGACTGATGGATTCACTGATTCAAATTTGCTAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGTATATTACCTAGTGGAAAGGAGATAGCTGTCAAGAGTTTAAAATCGGGTAGCGGACAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTCCATCATCGCCATCTTGTTTCACTTGTTGGATATTGTATTTCTGGTGGCCAAAGAATGTTGGTGTATGAATTTATTTCAAACTACACATTGGAGTATCACCTTCATGGAAAGGGTCGACCTACCATGGATTGGCCAACTAGAATGAGAATTGCAATTGGTTCTGCTAAAGGGCTTGCCTATCTTCACGAGGATTGTCATCCTCGCATCATTCATCGTGATATCAAAGCTGCAAATGTCCTCATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGCTTGGCTAAGTTGACAACCGATAATAATACTCATGTATCAACTCGTGTCATGGGGACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACCGAAAAGTCCGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTTATAACTGGAAAGCGACCTGTGGATGCCACAAATGCCATGGAGGACAGCTTAGTGGATTGGGCTCGACCACTACTGAACCGTGGACTAGAGGAGGATGGAAACTTCGGTGAGTTGGTGGATCCGTTTTTGGAAGGAAATTACAATCCTCAAGAACTCGCCAAAATGGCAGCCTGTGCTGCTGCTAGCATTCGTCATTCTGCCAAGAAGCGTTCGAAAATGAGCCAGATCGTAAGAACATTGGAAGGAGATGTCTCACTGGATGACTTGAAGGAGGGAATGAAAGCAGGGGGCCTCCCTGCTCATACCCCTTCATCTGGTAGCTCAGAGTACGACACAATGCAATACAATGCTGATATACAGAAGTTCAGAAAGGCGGTGTTTAATAACAGTCAGGAATATGGCACCAACAGTTTCTCCAGCGGCGAAGCACCAAAGCCAAAGCCATAA 1986 0.4622 MSSANNSSPDNSSPDNSTPDNSTPDDADNSSSPPKSPPPQSPPPQSPPPQSPPPQSPPPSPPAQSSPPPSQSTPNQPPPSPSQSTPNQPPPSPSQSQSSPPPPTSNNPSPSSPNSSFNPPTQAGGRSSPGSPGSGNSSSSQQKSLPNSSPGRSNGNYDINNSDTTKAIIGAMIGVGGVLLIMVIACIFFSRKKKRKQMYYYGDHPSHGKGNNNYYNNGPPQNYYGGPHGEHVVRLQNGMGPNGMGPNGMGPNGMGGMGPNGGGGGGGGWGAAPMMMNSADMSSNYSGGPPALPPPSPSLALGLKGGTFTYEELAAATDGFTDSNLLGQGGFGYVHKGILPSGKEIAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFISNYTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDATNAMEDSLVDWARPLLNRGLEEDGNFGELVDPFLEGNYNPQELAKMAACAAASIRHSAKKRSKMSQIVRTLEGDVSLDDLKEGMKAGGLPAHTPSSGSSEYDTMQYNADIQKFRKAVFNNSQEYGTNSFSSGEAPKPKP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06887 661 SUPERFAMILY Protein kinase-like (PK-like) 302 593 IPR011009 -
Vifa1g06887 661 MobiDBLite consensus disorder prediction 116 158 - -
Vifa1g06887 661 Gene3D Transferase(Phosphotransferase) domain 1 396 604 - -
Vifa1g06887 661 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 174 638 IPR047117 -
Vifa1g06887 661 MobiDBLite consensus disorder prediction 31 115 - -
Vifa1g06887 661 FunFam proline-rich receptor-like protein kinase PERK1 298 395 - -
Vifa1g06887 661 Gene3D Phosphorylase Kinase; domain 1 300 395 - -
Vifa1g06887 661 FunFam Proline-rich receptor-like protein kinase PERK1 396 604 - -
Vifa1g06887 661 Pfam Protein tyrosine and serine/threonine kinase 324 524 IPR001245 GO:0004672|GO:0006468
Vifa1g06887 661 ProSiteProfiles Protein kinase domain profile. 320 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06887 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vifa1g06887 661 SMART serkin_6 320 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06887 661 MobiDBLite consensus disorder prediction 1 158 - -
Vifa1g06887 661 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g06887 661 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06887 Vifa-Chr1 1061985181 1061988145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06887 49 640 Trihelix Transcription Factor Family AT1G70460 45.470 2.04e-146 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g06887 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06887 - - gmx:100777163 740.339