Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06886 ATGGGGATGGAGCAGAACAACATGATCGCACCGTTCATCATGAAGACATATCACATGGTTAACGAACCAAACACCGATAACCTGATCAAGTGGGGTCCATCTAACAACAGTTTCATCGTCCTCGACCCCCTCGAATTCTCTCACTCCCTTCTCCCTCTTTTCTTCAAACACAACAATTTCTCTAGCTTCGTTCGTCAACTCAACACCTACGGTTTCAGAAAAGTTGATCCGGATCGTTGGGAATTTGCGAATGAGTGGTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGAAAAAAGCACGTTGGTGGAGCTGGAAATGGAAGGAACAATAATAATAATAATAATAATAATAATAACTATTATTCTAATGAAGTGAAGTTTGAGGATTTTGAAGAAGATGAAGCTATGGTGACAGAAATATTGAAGCTGAAAGAAGAACAAAGAAATTTAGATGAAGAGCTTCAAGGGATGAACAAGAGATTAGAAACAACAGAGAAACGACCACAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAAATTCTGTCTAGAATACTCAACCAGAGAGAGAAACAGATAGTTCTTGATAAGAAAAAAAGACGGTTGATATCTCCAGCGACAACGGTTCTGGTGGCGGCTACCTCGACTTCCTCAGACTCGTCTGGCATGGCGGTTGGGAATTCTGTCAAGACAGAGTTTGAAGAAGACGAGGTAACTGTTGCTAATAATATGATGCCATCGTCTTCGCCGGAGACGGGATTTGAAATTGATTATTTCCACCGTGCGCCGCCGCCAGGAGTGACGCCGGTGGGGGGTTGGTGGGGACAGACGGAGATTGGACAAATGGGGTATGGGTATGATTGCAAAAATTTTCCGACTCCGTTGACGGGAGTGTCTCCGGTGCCGTTTATGGGGGGTGAGCATAGCGGCGATGGTAAAATGGGGAGTGTGGAAGTTTTAAGTGAAATGGCGGCGGAGAATAGTTCGTTGCCACCTTATCCTTTTTCTTTGTTGGATGGTGGCTTTTAG 1047 0.4355 MGMEQNNMIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRKKHVGGAGNGRNNNNNNNNNNNYYSNEVKFEDFEEDEAMVTEILKLKEEQRNLDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNQREKQIVLDKKKRRLISPATTVLVAATSTSSDSSGMAVGNSVKTEFEEDEVTVANNMMPSSSPETGFEIDYFHRAPPPGVTPVGGWWGQTEIGQMGYGYDCKNFPTPLTGVSPVPFMGGEHSGDGKMGSVEVLSEMAAENSSLPPYPFSLLDGGF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06886 348 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 221 IPR027725 -
Vifa1g06886 348 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g06886 348 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Vifa1g06886 348 Gene3D - 4 102 IPR036388 -
Vifa1g06886 348 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g06886 348 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g06886 348 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g06886 348 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g06886 348 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g06886 348 FunFam Heat stress transcription factor B-4 4 102 - -
Vifa1g06886 348 Coils Coil 143 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06886 Vifa-Chr1 1061945591 1061946750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06886 8 208 HSF AT3G24520 60.000 4.42e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g06886 HSF_DNA-bind 1.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06886 K09419 - gmx:100794896 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06886 1 1061945591 1061946750 Vifa1g06886 1 1061945591 1061946750 ECH