Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06880 ATGGTTCATCCTCCTGCATGTTATGAAATAAATGTGCTTAATCCATCTCGAACATGGCAAACTAGTAATATTCTAAAAATTGAACTCCCTGTTCTTGCCATTCAACTTGTCTTTGTTTTAATTATATCTCGTCTTCTATTCCTTATATATAAACCCTTTCATCAACCTCGTATCATTTCACAAATCACTGTTGGTTTTCTACTAACTCCACCATTACTTGGGAGATTCGTAGAAATTTTCATTTTTGTTTATCCTATAACTGGGGTGCTCAATATTGAAGTTCTAACAAATGTTGGGATCATATACTATGCATTCCTAAGTGGTTTGGAGATGAACTTAGATACTATTTTACATGTTGAGAAGAAAGGTGCAACCATTGCAATTTGCGGGATCGTTTTTCCAATGGTGACGGGACCGGCTTTATACGCTCTACATCGAAAAGTTTATGTCAATGTCGATGGACCTCCACTTGAAGAAATTACAATGAATGCTTATTTAGTATGGACTTTGGTTCTTACTGTCACCGGTTTTCCTGTTGTAGCTCATACCCTTTCTGAGTTGAAGCTTCTTTATACTGGTCTTGGTAAGGCTGCATTAACCGCATCTATGATCACTGAAACATATGCTTGGATTTTATTCACATTATGTGTTCCGTTTTCAATTAATGGTGTAACGGCAATATACTCGGTGTTAAGCACCATAGTATTTGCTATCATTTGCATCTTTGTGGTGCGTCCTATCGTTGTAAAAGTCATTGATCGCAAGATGGATAGGGATGAATGGGATGAAGGCCAATTACTATATGTGATTATGGGGCTTATTCTTTGTGCATACATAACAGATGTTCTTGGCACACATGACATTGTTGGGGCTTTTATTTTTGGGTTGATTTTACCTCATGGTAAATTTGCCGACATGGTAGCGTCATACACTGACGATTTTGGCGGCGTAATGTTGGCACCACTATTCTTTAGTGGCAGTGGAATGAGACTCGGTGTAAAAAGCATCTTCTACCAGCCAAATTGGCCCTATACACTTCTGGTTATATTATTGTTGTGTGTTCTAAAGATTTTAAGCACTTTGTTTGCCACATTCTTTTTTGGCATGCCATCTAAAGATGGTTTTGCTTTAGGATTGCTTCTTAATACAAAGGGTGCCATTGCATTGATAATGCTCAACATTGCTTGGGATAGATCAATTCTTTCTGGACAAAGCTATTCGGTTATAGCCTTTGCAGTCATTTTAATGACCGTAGTTGTGTCTCCGACAATCAATGCCATCTACAAGCCTAGAAAGAAATTTGAGCAGAACAAACTAAAGACTATACAAAAGTTAAGGCTTGATGCAGAGCTCAGGCTTCTAGCATGTGTTCACAATAATCGCCAGGCCACAGGGGTTATCGGTCTCATTGAAACTTTCAATGCCACTAGACTTTCACCTATACATGTTTTTGCACTTTACCCGGTTGAACTCACAGGACGTGCGGCTACAGTTGTCGCTGCACATATGGAGAAGCTTAATAGCCAACTTGGAGCACAAAATCTTACAAGAACCCAGGAAGAGCTAGAAAATATTAAGAGCACCTTTGAAGCATTTGGAGATGCATATGATGCTATCAGAGTTCAAACCTTAAATGTCGTGTCAGCCTATGCAACCGTTCATGAGGACATATATAATGCGGCTAATGAAAAGCGCACAAGCTTGATTATCCTTCCATTCCACAAACAACTAAGTTCGGAAAGAGTACTTGAAACAACCAATGCCACGTACAGAGATATAAACCTGAATGTGATGCAAAGTGCACCTTGCTCTGTGGGAATCTATGTTGATCGTGATCTTAGGTCATTACCGAAAATGAACTTTCATATTCTTATGATTTTTGTTGGAGGTCCTGACGACCGTGAAGCTTTAGCTGTTGCATGGAGGATGGCGGGGCACCCAGGAACCCGATTATCAGTAGTTCGGATGCTCCTGTTTGATGAAGCTGCAGAAGTAGACACCTCAAGTCATGCTGAAGCACAAGACATACTATTTGTTGTAATGGATTGTGAGAAGCAGAAGGAGTTAGACGATGAGTGTGTGAATTCATTTAGAATGACAGTAGTGAATAACAATGATTCTATAACCTATTCAGAGGTTGATGTCCATTCAGGCGAAGATATTCCCACAGTCCTCAATGAGCTAGACAAATTTCGTTGTGATTTATACATAGTTGGACAAGGGAATAGTAGAAACTCTCGGGTCTTTTCTAGTTTATTGGAATGGTCTGACTGTCTAGAACTTGGAGTTATAGGGGATATTTTGGCATCAAACAATTTTGGTTCGGGCTCATCTGTGCTAGTTGTGCAACAATATGGGTATGGAGGAATGGTTTTGGGAAAGCAATCCAGCAATAAAGATGGTTTTAAGTCACTTATCGTGAAGACAGAATAA 2433 0.3938 MVHPPACYEINVLNPSRTWQTSNILKIELPVLAIQLVFVLIISRLLFLIYKPFHQPRIISQITVGFLLTPPLLGRFVEIFIFVYPITGVLNIEVLTNVGIIYYAFLSGLEMNLDTILHVEKKGATIAICGIVFPMVTGPALYALHRKVYVNVDGPPLEEITMNAYLVWTLVLTVTGFPVVAHTLSELKLLYTGLGKAALTASMITETYAWILFTLCVPFSINGVTAIYSVLSTIVFAIICIFVVRPIVVKVIDRKMDRDEWDEGQLLYVIMGLILCAYITDVLGTHDIVGAFIFGLILPHGKFADMVASYTDDFGGVMLAPLFFSGSGMRLGVKSIFYQPNWPYTLLVILLLCVLKILSTLFATFFFGMPSKDGFALGLLLNTKGAIALIMLNIAWDRSILSGQSYSVIAFAVILMTVVVSPTINAIYKPRKKFEQNKLKTIQKLRLDAELRLLACVHNNRQATGVIGLIETFNATRLSPIHVFALYPVELTGRAATVVAAHMEKLNSQLGAQNLTRTQEELENIKSTFEAFGDAYDAIRVQTLNVVSAYATVHEDIYNAANEKRTSLIILPFHKQLSSERVLETTNATYRDINLNVMQSAPCSVGIYVDRDLRSLPKMNFHILMIFVGGPDDREALAVAWRMAGHPGTRLSVVRMLLFDEAAEVDTSSHAEAQDILFVVMDCEKQKELDDECVNSFRMTVVNNNDSITYSEVDVHSGEDIPTVLNELDKFRCDLYIVGQGNSRNSRVFSSLLEWSDCLELGVIGDILASNNFGSGSSVLVVQQYGYGGMVLGKQSSNKDGFKSLIVKTE 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06880 810 Gene3D - 453 753 - -
Vifa1g06880 810 PANTHER CATION/H + ANTIPORTER 22 785 - -
Vifa1g06880 810 Gene3D - 31 438 IPR038770 -
Vifa1g06880 810 Pfam Sodium/hydrogen exchanger family 38 426 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06880 Vifa-Chr1 1060691957 1060694580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06880 7 785 Antiporter Super Family AT2G13620 37.262 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06880 - K26731 gmx:100804266 1185.63