Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06877 ATGGCGGCACCTGCATGTTATACTATAAATCTGGTTAATCCAAATAGAATATGGCAAACTGATAATGTCTTAAAAAAGGAGCTTCCCATTCTCGCCTTTCAAGTCGGTTTTGTCGTCCTGATTTCTCGTCTCTTCTTCTTTATATATAGACCTCTTCATCTACCTCGTATCTTGTCTCAACTCTCCGTTGGTTTTCTACTAACTCCGCCATTAATTGGGAATTACACAGAGGTTTTCACATTCATTTTTCCGTTAACCGGTGTTTTTAACGTTGAAATTCTATCGCATATTGGTATAATCTATTATGCATTTCTCAGTGGTTTGGAGATGAACTTGAATGTCGTTTTACATGTTAAGAAGAAAGCCGGGAGCATTGCGATTGCCGGGATAGTTTTTCCAATGGTGATGGGACCGCTTTTATATAATCTACACAGAAGAACTTATAACAAAGGTGATGGGGTGGAACTTGAAGAGAATGCAGTACGTGCTAATGTGCTATGGACTTTAGTTCTTACTGTGACTGGTTTTCCTGTTATCGCTCATTCTCTTTCTGAGTTGAAGCTTCTGTATACTGGTCTTGGTGAAGCTGCATTAACAGCTTCTATGGTCAGTGACACATATGCATGGGTCTTATTCACACTCTTTGTTCCAATTTCCATTAATCGTGATGGTACAAGAGCAATATACTCGGTGTTGAGTACAATAATATTTGTTTTCATTTGCATCTTCATTGTGCGTCCTATCATTGTTAAAGTCATCGATCGCAAGACGGAAAGAGACGAATGGGATGATAGCAACTTGCTTTATGTGGTTATGGGACTTTTGGTTTGTTCATCCATAACAGATATTCTTGGTACACAGGCTGTTGTTGGTGCCTTTGTGTATGGATTGATTTTGCCTCATGGGAAATTCGCTGACAAAGTGGTGTCAATCTCTGATGATTTTGGTAGCGGTTTTCTCGCGCCGCTGTTCTTTAGTGGCACAGGAATGAGACTCATGGTTGCCACCCTTTTCTATCAGGATAACGTGTTTTTGACATTTATTGTTATAATCTTGCTGTGTTCTATAAAGGTTCTAGGCACTATCTTTGCAGCTTTCTTCTTTGGCATGCGTACTCGTGACAGTTTCGCTCTAGGCTTGATTCTCAATACCAAAGGCGCTATTGCACTAATAATGCTCAACATCGCTTGGGATCGAACGATTCTTTCTGTACCAAGCTATGTTGTTCTATCATCTTCAGTTCTTCTAATGACTATAGTGGTGTCTCCTATCATCGATGCAATTTACAAGCCTAGAAAGAGATTTGAGCAAAACAAGTTGAAAACCATACAAAAGCTAAGAAATGATGCAGAACTCAGAATTCTAGCATGTGTTTACAATACTCGACAAGCCACCGGGATTTTAAGCCTAATTGAATTATTCAATGTCACTAGACTCTCACCATTACATGTTTTCGGACTTCATCTTGTCGAACTCACAAGAAGCGCAGCAGCACTTGTTGCTGCCCATATGGAGAAACCAAGTGGCGAACCAGGAGCACAGAATCTCACACAATCTCAAGTAGAACAAGAAGGTATTAACAGCACGTTCGAATCATTCGGAGAATCATATGATGCTATAAGAGTTCGAACATTAAACGTAGTCTCCGCTTTCGAAACCATTCACGAAGATATATACAATTCAGCTAACGAAAAATGCACGAGCCTGATCATCATTCCTTTTCACAAACAGTTAAGCTCAGAAGGCGCACTCAAAACAGCCAGTGTCGTGTATAGAGACATAAACATGAATGTATTGCAAAGTGCACCTTGTTCAGTAGGAATATTCGTCGATCGTGATATCGGTTCAATATCAAAACTAAACTTCTGCATTCGTTTGATCTTTGTTGGTGGACCGGATGACCGCGAAGCGATCGCGGTTGCATGGAGGATGGCAGGTCATCCGGGAATCAATCTATCAGTAGTAAGAATGCTTCTGTTTGATGATGCTGCGGCAGTGGACACATCAATTCAGGTTGAATCACAAAGTATATTATCAGCAGTAATGGATAACGAGAAACAAAAGGAGTTAGACGACGAATACATGAATTCGTTTAGACTAACAGCAGTGAACAATGATGATTCTATAACATATTCAGAGATTGATGTTCATTCAGGCGAAGATATTCCGAAAATACTTAACGAGATAGATTCGTATGGTTGTGATTTGTATATAGTTGGACAAGGAAATGGTAGAAACTCTCGAGTGTTTTCGGATATGTTGGAATGGTGTGATTGTTCGGAACTTGGAGTTATAGGAGATATTTTAGGGTCGAATAATTCTGGTTCACGTTCTTCTGTATTGGTTGTGCAACAATATGGATATGGAGGAATGGTTTTAGGAAAACAGTCTAATAATGTGACTACTAATGATGATGGTAGTAAAACACTTGTTGTGAAATCAGAATGA 2448 0.395 MAAPACYTINLVNPNRIWQTDNVLKKELPILAFQVGFVVLISRLFFFIYRPLHLPRILSQLSVGFLLTPPLIGNYTEVFTFIFPLTGVFNVEILSHIGIIYYAFLSGLEMNLNVVLHVKKKAGSIAIAGIVFPMVMGPLLYNLHRRTYNKGDGVELEENAVRANVLWTLVLTVTGFPVIAHSLSELKLLYTGLGEAALTASMVSDTYAWVLFTLFVPISINRDGTRAIYSVLSTIIFVFICIFIVRPIIVKVIDRKTERDEWDDSNLLYVVMGLLVCSSITDILGTQAVVGAFVYGLILPHGKFADKVVSISDDFGSGFLAPLFFSGTGMRLMVATLFYQDNVFLTFIVIILLCSIKVLGTIFAAFFFGMRTRDSFALGLILNTKGAIALIMLNIAWDRTILSVPSYVVLSSSVLLMTIVVSPIIDAIYKPRKRFEQNKLKTIQKLRNDAELRILACVYNTRQATGILSLIELFNVTRLSPLHVFGLHLVELTRSAAALVAAHMEKPSGEPGAQNLTQSQVEQEGINSTFESFGESYDAIRVRTLNVVSAFETIHEDIYNSANEKCTSLIIIPFHKQLSSEGALKTASVVYRDINMNVLQSAPCSVGIFVDRDIGSISKLNFCIRLIFVGGPDDREAIAVAWRMAGHPGINLSVVRMLLFDDAAAVDTSIQVESQSILSAVMDNEKQKELDDEYMNSFRLTAVNNDDSITYSEIDVHSGEDIPKILNEIDSYGCDLYIVGQGNGRNSRVFSDMLEWCDCSELGVIGDILGSNNSGSRSSVLVVQQYGYGGMVLGKQSNNVTTNDDGSKTLVVKSE 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06877 815 PANTHER CATION/H + ANTIPORTER 6 786 - -
Vifa1g06877 815 Gene3D - 30 439 IPR038770 -
Vifa1g06877 815 Pfam Sodium/hydrogen exchanger family 37 424 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06877 Vifa-Chr1 1060179435 1060182556 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06877 6 786 Antiporter Super Family AT2G13620 36.882 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06877 - - gmx:100804266 1164.83