Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06873 ATGGCGGCGAATAACAAAGTGAAGAACGATGATCCTGCAGTAGAGTCACCTACTTCGGTCCTAGAGGAAGAGGAAATGGAGATGAAGTTGGAGGAAGAGGTGGTTGCTGATGATGGATCTTCTCTTGTACCGAAATCGATGGCGGAGGAAGAAGAGAACTTGCTTAAAGCTCGTGCTAAGGAAGAGGAGGAACAGTTACAAGAGGCGCAGGCTCTTAATGACTCGCAGTTTGACAAGTTGGATGAGCTTTTGACACAAACGAAACTCTACTCGGAGTTTCTTTTGGAGAAAATGGATGACATCACACTGACTGCGGGTGAAGAAGTGATTAAGGAAGAGGAAGAGAGTCAAATGGATACTAAACCTAAGGGCCGTGGAAGAAAGAGAAAGGCGCCTAAACAATGCAATACTGGGAAAGCCAAAAAGGCAGTTGAAGCCATGATATCAAGATCTAAAGAAACTGTGAAGACTGAAGATGTGGATTTGACTGAGGAAGAGAGAACTGAGAAAGAGCAAAGGGAGCTGGTGCCTTTACTAACGGGTGGGAAATTGAAGTCTTATCAACTGAAGGGTGTGAAGTGGTTAATCTCCTTGTGGCAAAATGGACTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGGCTTATTTCTCATCTTAAATCAAAAGGGTTGGATGGACCATATATGATTATTGCTCCTCTATCAACCCTCTCCAATTGGATGAATGAGATTTCTAGGTTTACACCATCACTCCCTGCTGTTATCTACCATGGGGACAGAAATCAGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAATTGGTCCAAAATTTCCCATAGTAATAACTTCTTATGAGATTGCAATGAATGATGCTAAGAAAATTTTCCGGGCATACACATGGAAATATCTTGTTGTTGATGAGGGGCACAGGCTCAAAAACTCACAATGCAAATTAGTGAGGATGTTGAAATACATCAGTGTTGAAAATAAGCTTCTATTGACTGGGACACCGCTCCAGAATAATTTGGCAGAGCTGTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCGTCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGTGCTACTGGAGCTACAATGGAAGAATTGGAAGAGAAAAGAAGAAACCAGGTAGTGGCCAAGCTTCATGCAATTCTCAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTATCGTTGCCACGGAAAAAAGAAATAATCATTTATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGATCATCTAATTAACGAGACATTCGAGAAACATTTAAACAGGAAACTATCAATTGGGCGTGCTGCGGCGAGTCTTAATAACTTGATGATTCAACTTAGGAAAGTCTGCAACCATCCTGACATCTTAGAGTCACCCTATGATGGTTCATATTTTTATCCTCCTCTGAATGAGATAATCGAGCAATGCGGAAAATTCCAATTGCTCAACCGGTTGTTGGAGCGGCTATTTGCACGGAATCACAAAGTTCTGATCTTCAGTCAATGGACTAAAGTGCTAGATATAATGGATTATTATTTTAGTGAGAAGGGTTTTGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGATGAAAGGAAACGTCAGATCCAGGAATTCAACGATATTAACAGCAATTTCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTTACCGCGGCTGACACTTGCATTCTTTATGACAGTGACTGGGCCATGGATCGATGTCATAGAATTGGTCAATCAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCACAGTCCGTTGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCACGTGGTGATAGAGAAAGGACAGTTTCATCAAGAACGCACAACACCTTCCATTATGGATGAAATGGAGGAAGAGGATATTTTGGCATTGCTTCGAGATGATGAAACAGTTGAGGACAAAATGATACAGACAGATATTAGTGATGAAGACCTGGAGAATCTGTTGGATCGCAGTGACCTTGTTGTCAATAGCTCAGCTGATGTTAAACCTCCAGTTAGTACCTTTCCCCTCAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCATCTGGCGGCATGCTTTCCACTCTCAACAGCTAA 2232 0.4207 MAANNKVKNDDPAVESPTSVLEEEEMEMKLEEEVVADDGSSLVPKSMAEEEENLLKARAKEEEEQLQEAQALNDSQFDKLDELLTQTKLYSEFLLEKMDDITLTAGEEVIKEEEESQMDTKPKGRGRKRKAPKQCNTGKAKKAVEAMISRSKETVKTEDVDLTEEERTEKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGLISHLKSKGLDGPYMIIAPLSTLSNWMNEISRFTPSLPAVIYHGDRNQRDEIRRKHMPRTIGPKFPIVITSYEIAMNDAKKIFRAYTWKYLVVDEGHRLKNSQCKLVRMLKYISVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCATGATMEELEEKRRNQVVAKLHAILRPFLLRRMKSDVELSLPRKKEIIIYANMTEHQKSLQDHLINETFEKHLNRKLSIGRAAASLNNLMIQLRKVCNHPDILESPYDGSYFYPPLNEIIEQCGKFQLLNRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDINSNFRIFLLSTRAGGLGINLTAADTCILYDSDWAMDRCHRIGQSKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTPSIMDEMEEEDILALLRDDETVEDKMIQTDISDEDLENLLDRSDLVVNSSADVKPPVSTFPLKGPGWEVVIPTASGGMLSTLNS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06873 743 Gene3D - 185 415 IPR038718 -
Vifa1g06873 743 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g06873 743 Gene3D - 420 712 IPR027417 -
Vifa1g06873 743 SMART ultradead3 180 375 IPR014001 -
Vifa1g06873 743 PANTHER SNF2/RAD54 HELICASE FAMILY 23 694 - -
Vifa1g06873 743 Coils Coil 45 86 - -
Vifa1g06873 743 MobiDBLite consensus disorder prediction 109 141 - -
Vifa1g06873 743 Pfam Helicase conserved C-terminal domain 509 612 IPR001650 -
Vifa1g06873 743 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
Vifa1g06873 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 666 IPR001650 -
Vifa1g06873 743 CDD SF2_C_SNF 496 623 - -
Vifa1g06873 743 SMART helicmild6 536 613 IPR001650 -
Vifa1g06873 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 699 IPR027417 -
Vifa1g06873 743 FunFam ATP-dependent DNA helicase DDM1 178 423 - -
Vifa1g06873 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Vifa1g06873 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06873 Vifa-Chr1 1059193294 1059199507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06873 152 634 RAD5 or RAD16-like Gene Family AT1G02670 26.178 3.49e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g06873 SNF2_N 5.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06873 K19001 - gmx:100777687 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06873 1 1059193294 1059199507 Vifa1g06873 1 1059193294 1059199507 ECH