Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06872 ATGGCGGCGAATAACAAAGTGAAGAACGATGATCCTGCAGTAGAGTCACCTACTTCGGTCCTAGAGGAAGAGGAAATGGAGATGAAGTTGGAGGAAGAGGTGGTTGCTGATGATGGATCTTCTCTTGTACCGAAATCGATGGCGGAGGAAGAAGAGAACTTGCTTAAAGCTCGTGCTAAGGAAGAGGAGGAACAGTTACAAGAGGCGCAGGCTCTTAATGACTCGCAGTTTGACAAGTTGGATGAGCTTTTGACACAAACGAAACTCTACTCGGAGTTTCTTTTGGAGAAAATGGATGACATCACACTGACTGCGGGTGAAGAAGTGATTAAGGAAGAGGAAGAGAGTCAAATGGATACTAAACCTAAGGGCCGTGGAAGAAAGAGAAAGGCGCCTAAACAATGCAATACTGGGAAAGCCAAAAAGGCAGTTGAAGCCATGATATCAAGATCTAAAGAAACTGTGAAGACTGAAGATGTGGATTTGACTGAGGAAGAGAGAACTGAGAAAGAGCAAAGGGAGCTGGTGCCTTTACTAACGGGTGGGAAATTGAAGTCTTATCAACTGAAGGGTGTGAAGTGGTTAATCTCCTTGTGGCAAAATGGACTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGGCTTATTTCTCATCTTAAATCAAAAGGGTTGGATGGACCATATATGATTATTGCTCCTCTATCAACCCTCTCCAATTGGATGAATGAGATTTCTAGGTTTACACCATCACTCCCTGCTGTTATCTACCATGGGGACAGAAATCAGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAATTGGTCCAAAATTTCCCATAGTAATAACTTCTTATGAGATTGCAATGAATGATGCTAAGAAAATTTTCCGGGCATACACATGGAAATATCTTGTTGTTGATGAGGGGCACAGGCTCAAAAACTCACAATGCAAATTAGTGAGGATGTTGAAATACATCAGTGTTGAAAATAAGCTTCTATTGACTGGGACACCGCTCCAGAATAATTTGGCAGAGCTGTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCGTCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGTGCTACTGGAGCTACAATGGAAGAATTGGAAGAGAAAAGAAGAAACCAGGTAGTGGCCAAGCTTCATGCAATTCTCAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTATCGTTGCCACGGAAAAAAGAAATAATCATTTATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGATCATCTAATTAACGAGACATTCGAGAAACATTTAAACAGGAAACTATCAATTGGGCGTGCTGCGGCGAGTCTTAATAACTTGATGATTCAACTTAGGAAAGTCTGCAACCATCCTGACATCTTAGAGTCACCCTATGATGGTTCATATTTTTATCCTCCTCTGAATGAGATAATCGAGCAATGCGGAAAATTCCAATTGCTCAACCGGTTGTTGGAGCGGCTATTTGCACGGAATCACAAAGTTCTGATCTTCAGTCAATGGACTAAAGTGCTAGATATAATGGATTATTATTTTAGTGAGAAGGGTTTTGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGATGAAAGGAAACGTCAGATCCAGGAATTCAACGATATTAACAGCAATTTCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTTACCGCGGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTGCAGGCCATGGATCGATGTCATAGAATTGGTCAATCAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCACAGTCCGTTGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCACGTGGTGATAGAGAAAGGACAGTTTCATCAAGAACGCACAACACCTTCCATTATGGATGAAATGGAGGAAGAGGATATTTTGGCATTGCTTCGAGATGATGAAACAGTTGAGGACAAAATGATACAGACAGATATTAGTGATGAAGACCTGGAGAATCTGTTGGATCGCAGTGACCTTGTTGTCAATAGCTCAGCTGATGTTAAACCTCCAGTTAGTACCTTTCCCCTCAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCATCTGGCGGCATGCTTTCCACTCTCAACAGCTAA 2253 0.4203 MAANNKVKNDDPAVESPTSVLEEEEMEMKLEEEVVADDGSSLVPKSMAEEEENLLKARAKEEEEQLQEAQALNDSQFDKLDELLTQTKLYSEFLLEKMDDITLTAGEEVIKEEEESQMDTKPKGRGRKRKAPKQCNTGKAKKAVEAMISRSKETVKTEDVDLTEEERTEKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGLISHLKSKGLDGPYMIIAPLSTLSNWMNEISRFTPSLPAVIYHGDRNQRDEIRRKHMPRTIGPKFPIVITSYEIAMNDAKKIFRAYTWKYLVVDEGHRLKNSQCKLVRMLKYISVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCATGATMEELEEKRRNQVVAKLHAILRPFLLRRMKSDVELSLPRKKEIIIYANMTEHQKSLQDHLINETFEKHLNRKLSIGRAAASLNNLMIQLRKVCNHPDILESPYDGSYFYPPLNEIIEQCGKFQLLNRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDINSNFRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTPSIMDEMEEEDILALLRDDETVEDKMIQTDISDEDLENLLDRSDLVVNSSADVKPPVSTFPLKGPGWEVVIPTASGGMLSTLNS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06872 750 FunFam Chromatin complex subunit A 106 424 651 - -
Vifa1g06872 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 666 IPR001650 -
Vifa1g06872 750 SMART helicmild6 536 620 IPR001650 -
Vifa1g06872 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 706 IPR027417 -
Vifa1g06872 750 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g06872 750 SMART ultradead3 180 375 IPR014001 -
Vifa1g06872 750 CDD SF2_C_SNF 496 630 - -
Vifa1g06872 750 FunFam ATP-dependent DNA helicase DDM1 178 423 - -
Vifa1g06872 750 PANTHER SNF2/RAD54 HELICASE FAMILY 23 701 - -
Vifa1g06872 750 Coils Coil 45 86 - -
Vifa1g06872 750 MobiDBLite consensus disorder prediction 109 141 - -
Vifa1g06872 750 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
Vifa1g06872 750 Pfam Helicase conserved C-terminal domain 509 620 IPR001650 -
Vifa1g06872 750 Gene3D - 420 719 IPR027417 -
Vifa1g06872 750 Gene3D - 185 415 IPR038718 -
Vifa1g06872 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Vifa1g06872 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06872 Vifa-Chr1 1059193294 1059199507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06872 152 641 RAD5 or RAD16-like Gene Family AT1G02670 26.609 5.77e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g06872 SNF2_N 6.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06872 K19001 - gmx:100777687 1167.91