Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06869 ATGGCTCTCGGCGTCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTATGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATCTGCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTACTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGCGCTGTATACTTCGAATGGCCTTCGGAGAGAACAGATGGATATATCCTTCCATGTATAGTCGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTATCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 753 0.409 MALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYREICLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHQGVHGLGPELACQIVKSIGEKDVLKKFTSEGLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICAVYFEWPSERTDGYILPCIVERDLRRFANLRSTSSELGLNLPLHEGLESPADGRRSSESSYRIGDNGTSGGTN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06869 250 Gene3D - 1 70 - -
Vifa1g06869 250 Pfam XPG I-region 4 86 IPR006086 GO:0004518
Vifa1g06869 250 FunFam Flap endonuclease GEN-like 1 71 128 - -
Vifa1g06869 250 SMART xpgineu 1 71 IPR006086 GO:0004518
Vifa1g06869 250 MobiDBLite consensus disorder prediction 230 250 - -
Vifa1g06869 250 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 2 213 IPR006084 -
Vifa1g06869 250 SUPERFAMILY PIN domain-like 2 86 IPR029060 -
Vifa1g06869 250 Gene3D - 71 136 - -
Vifa1g06869 250 MobiDBLite consensus disorder prediction 225 250 - -
Vifa1g06869 250 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 91 IPR006084 -
Vifa1g06869 250 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 21 41 IPR006084 -
Vifa1g06869 250 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 71 208 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06869 Vifa-Chr1 1058401232 1058403301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06869 3 107 Core DNA Replication Machinery Family AT5G26680 32.710 5.84e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06869 K15338 - gmx:100806919 384.03