Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06867 ATGTCTGACTCAAACATAACTTTCTACTGTCTTTCATCCATTCTTTCTCTTCTTCTCATCTTCATTCTCATCAAAAGAAAACAAACCAAACCCAAACTCAATCTTCCTCCAGGAAAAATGGGTTGGCCTTTTCTTGGTGAAACCATTGGTTACTTGAAACCTTATTCTGCTACAACAATAGGTGAATTCATGGAACAACACATAGCAAGGTATGGTAAAATTTATAAGTCAAAATTGTTTGGTGAACCAGCTATAGTTTCAGCAGATGCTGGGTTGAATAGGTTCATATTACAGAATGAAGGAAAATTATTTGAGTGTAGCTACCCTAGAAGCATTGGTGGAATACTTGGGAAATGGTCTATGTTGGTTTTGGTTGGTGACATGCACAGAGACATGCGTGTTATATCTCTCAATTTTTTGAGTCATGCTAGACTTAGAACACATCTTTTGAAAGAGGTTGAGAAACACACTCTTCTTGTTTTGAGTTCTTGGAAGGAAAAATCCTCATTTGCAGCTCAAGATGAAGCCAAAAAGTTCACATTTAATTTAATGGCAGAGCACATTATGAGTTTGCAACCTGGGGAGATAGAGACAGAGAAATTAAAGAAAGAGTATGTTACTTTTATGAAAGGTGTTGTATCAGCACCATTGAATTTTCCTGGAACTGCATACTGGAAAGCATTAAAGTCTAGGTGCAAAATATTGAAGTTGATAGAGGAAAAAATGGAAGCAAGGATGAAAAGAATGAAAGATGGAAATGAAAATTTGGAGGAAGATGATCTTTTGAATTGGGTTTTGAAACATTCAAATCTTTCAACAGAGCAAATTCTTGACTTGATTCTGAGTTTGCTTTTTGCTGGCCATGAAACTTCTTCTGTTTCTATAGCTTTGGCTATTTACTTTCTTCCTGGTTGCCCTCAAGCTATACAACAGTTAAGGGAAGAACACAGAGAAATTGCCAGAGTCAAAAAGCAAGCAGGGGAAACAGAACTGACTTGGGAAGACTACAAAAAAATGGAATTTACTCATTGTGTTGTGAATGAAACACTTAGGCTAGGTAATGTTGTGAGGTTCCTTCATAGGAAAGCTCTTAAAGATGTTCGGTACAAAGGTTATGATATTCCTTGTGGGTGGAAAGTCCTCCCAGTTATTGCAGCCGTGCATTTGGATCCATTACTTTTTGACCAACCTCAACACTTCAATCCATGGAGATGGCAGAACAATGGAAATTGCTCAAACGCAAGCAGTAATAATAATAATTTCTTACCGTTTGGAGGAGGACCACGACTATGTGCAGGATCAGAATTAGCTAAGCTTGAAATGGCTGTTTTCATCCACTATCTCATCCTCAACTACCATTGGGAGTTAATTGATAATAATGATCAAGCTTTTGCCTACCCTTTTGTCGATTTTCCTAAAGGCCTACAAATTCAAGTTCAACCCCATTAA 1449 0.3734 MSDSNITFYCLSSILSLLLIFILIKRKQTKPKLNLPPGKMGWPFLGETIGYLKPYSATTIGEFMEQHIARYGKIYKSKLFGEPAIVSADAGLNRFILQNEGKLFECSYPRSIGGILGKWSMLVLVGDMHRDMRVISLNFLSHARLRTHLLKEVEKHTLLVLSSWKEKSSFAAQDEAKKFTFNLMAEHIMSLQPGEIETEKLKKEYVTFMKGVVSAPLNFPGTAYWKALKSRCKILKLIEEKMEARMKRMKDGNENLEEDDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFLPGCPQAIQQLREEHREIARVKKQAGETELTWEDYKKMEFTHCVVNETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDPLLFDQPQHFNPWRWQNNGNCSNASSNNNNFLPFGGGPRLCAGSELAKLEMAVFIHYLILNYHWELIDNNDQAFAYPFVDFPKGLQIQVQPH 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06867 482 CDD CYP90-like 67 481 - -
Vifa1g06867 482 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS E-class P450 group I signature 421 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS E-class P450 group I signature 343 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS E-class P450 group I signature 431 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 Pfam Cytochrome P450 36 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 FunFam Cytochrome P450 90B1 25 481 - -
Vifa1g06867 482 PANTHER CYTOCHROME P450 26 31 458 - -
Vifa1g06867 482 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506|GO:0016705
Vifa1g06867 482 Gene3D Cytochrome P450 24 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 Coils Coil 239 259 - -
Vifa1g06867 482 SUPERFAMILY Cytochrome P450 32 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06867 482 Coils Coil 309 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06867 Vifa-Chr1 1058004217 1058008253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06867 25 406 Cytochrome P450 AT3G50660 74.690 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06867 K09587 - gmx:100802498 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06867 1 1058004217 1058008253 Vifa1g06867 1 1058004217 1058008253 ECH
Vifa1g06867 1 1058004217 1058008253 Vifa4g02474 4 744371062 744374561 PCT