Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06862 ATGTCGACGGCTCCGGCACCTTCTTCTCCGCCGGCGGCTAACGCCACGGCACCTCCGCCAGCAACCCCATCCGCACCTCCTCCAGCCACACCTTCTGCACCGCCACCTTCCAACCCACCTCCGGCCACTCCTTCATCACCGCCTCCGGCGACACCCTCGGCACCTCCCCCGGCGACTCCTTCATCACCACCTCCTCCGAAGACCCCCTCATCTCCTCCTCCAGCAACTCCTTCAACTCCTCAGCCAACACCAGCAGCACCGTCGACTTCTCCGCCGGCACCAACCACGCCGTCGCCTCCCGAAGGTGGAAACACTCCTCCCAGTCCACCTTCACGGGGCTCACCGCCCTCTCCAAAAGGCACTGATCAAAGCCCTACACCTCCTTCCGCCAAAACTCCGCCGTCGCCTCCTTCATCGTCGTCAAGTATGAGTACCGGTGTAGTCGTGGGAATCGCCGTCGGAGCGGTGGCGATTCTTGTGGTGTTTAGTATTCTTTGCATTTGCTGTAGGAAGAAAAAGAGAAGACGTGATGAAGAATACTATGGTCAGCAGCATCAGCAACCACCACCTCAGGGACCCAAATTTGATCCTTATGGCGGTCCTCCGAATCAGTGGCAACATAATTCTCACCCTCCTTCAGATCATGTAGCCTCAATGAAGCCACCACCACCTCCTGCTGCAATTCCATCGCGACCTCCGTCTCATGTTGCTCCGCCTCCTCCTCCTCTCATGAGCAGCAGTGGTGGTACCGGCTCAAACTATTCAGGCGGTGAACTGCTTCCACCTCCATCTCCAGGCCTTGCATTTAGTACTGCAAAAAGTACGTTTACATACGAGGAGTTGGCACGTGCAACGGATGGCTTCTCTGATGCTAACCTCCTTGGACAAGGTGGATTTGGATATGTTCATAGAGGTATTCTCCCTAATGGCAAAGAGGTTGCTGTTAAGCAGCTAAAAGCTGGAAGTGGACAAGGAGAACGCGAATTTCAAGCTGAAGTTGAGATTATTAGCCGTGTTCATCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACTGGGTTTCAGAGGCTACTTGTTTATGAGTTTGTTCCAAACAATACATTGGAATTCCATTTACACGGAAATGGACGACCAACTATGGATTGGTCAACAAGACTGCGAATTGCTTTAGGATCTGCAAAAGGACTTGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATTAAAGCTGCTAACATCCTTCTCGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTTGGTCTTGCAAAGATTGCTTCTGATCTCAACACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCAGCGAGTGGAAAACTTACAGACAAATCAGATGTTTTCTCTTATGGAGTCATGCTCCTTGAGCTATTAACTGGACGCCGACCGGTTGATAAAAATCAGACTTACATGGATGATAGTTTGGTAGAATGGGCTAGGCCTTTGCTCATGCGTGCTTTAGAAGAAAATAATTTAGATTCTCTGATTGATCCAAGGCTTCAGAATGAATTTGACCCTAGTGAGATGACTCGTATGGTAGCATGCGCTGCAGCTTGCACACGCCACTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTGCGCGCCTTAGAAGGAGACGTGTCACTAGCAGATCTTAATGAAGGAGTAAGACCTGGACACAGCAGTGTCTACAGTTCTCATGAAAGCTCAGATTATGATACTCAACAATACAAAGAAGACATGATAAAGTTCAGAAAAATGGCATTAGGAACTCAGGAGTATGCTGCAAGCAGTGAGTACAGTGCAGCTACAAGTGAATATGGCTTAAACCCGTCTGGCTCAAGCAGCGAAAACCAAAGCCGCCAGACAACAAGGGAAATGGAATTAAGAAAGCTGAAGAACAGTCAAGGATTCAGTGGAAGTTCATGA 1983 0.4912 MSTAPAPSSPPAANATAPPPATPSAPPPATPSAPPPSNPPPATPSSPPPATPSAPPPATPSSPPPPKTPSSPPPATPSTPQPTPAAPSTSPPAPTTPSPPEGGNTPPSPPSRGSPPSPKGTDQSPTPPSAKTPPSPPSSSSSMSTGVVVGIAVGAVAILVVFSILCICCRKKKRRRDEEYYGQQHQQPPPQGPKFDPYGGPPNQWQHNSHPPSDHVASMKPPPPPAAIPSRPPSHVAPPPPPLMSSSGGTGSNYSGGELLPPPSPGLAFSTAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGNGRPTMDWSTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTYMDDSLVEWARPLLMRALEENNLDSLIDPRLQNEFDPSEMTRMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGVRPGHSSVYSSHESSDYDTQQYKEDMIKFRKMALGTQEYAASSEYSAATSEYGLNPSGSSSENQSRQTTREMELRKLKNSQGFSGSS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06862 660 SUPERFAMILY Protein kinase-like (PK-like) 267 561 IPR011009 -
Vifa1g06862 660 SMART serkin_6 288 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06862 660 Gene3D Phosphorylase Kinase; domain 1 264 363 - -
Vifa1g06862 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Vifa1g06862 660 MobiDBLite consensus disorder prediction 216 245 - -
Vifa1g06862 660 MobiDBLite consensus disorder prediction 618 640 - -
Vifa1g06862 660 Gene3D Transferase(Phosphotransferase) domain 1 364 571 - -
Vifa1g06862 660 MobiDBLite consensus disorder prediction 1 144 - -
Vifa1g06862 660 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Vifa1g06862 660 CDD STKc_IRAK 294 563 - -
Vifa1g06862 660 PRINTS Proline rich extensin signature 4 20 - -
Vifa1g06862 660 PRINTS Proline rich extensin signature 24 36 - -
Vifa1g06862 660 PRINTS Proline rich extensin signature 57 73 - -
Vifa1g06862 660 PRINTS Proline rich extensin signature 36 57 - -
Vifa1g06862 660 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 153 623 IPR047117 -
Vifa1g06862 660 MobiDBLite consensus disorder prediction 179 266 - -
Vifa1g06862 660 Pfam Protein tyrosine and serine/threonine kinase 293 561 IPR001245 GO:0004672|GO:0006468
Vifa1g06862 660 MobiDBLite consensus disorder prediction 618 660 - -
Vifa1g06862 660 ProSiteProfiles Protein kinase domain profile. 288 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06862 660 MobiDBLite consensus disorder prediction 11 135 - -
Vifa1g06862 660 FunFam proline-rich receptor-like protein kinase PERK1 266 363 - -
Vifa1g06862 660 FunFam Proline-rich receptor-like protein kinase PERK1 364 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06862 Vifa-Chr1 1057349825 1057353248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06862 106 643 Trihelix Transcription Factor Family AT1G70460 48.889 8.93e-167 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g06862 PK_Tyr_Ser-Thr 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06862 - - gmx:100781944 825.083