Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06859 ATGAACAAAGAGGATCTACGTTGGTGTTCTCGCGGGGGATTCGTAGGTAGCAGTGTTTCAACCACGACTCGTAATCTTAAATGGAAAAATCTGGCTATCCAAAAGGTTTGGAAGCAATCTGAGGATAAGCGGGACATAGCAGAAGAATGGAGAAAGTTGCATGCAGAGGCTAAGAGGAGGAAAGAGGAAGCTGAAAGTTCTTCAAGCAGGAGTTGCCAAAAAATTACACGTGCTGAACTTATGGACAAATACTATGAGTATGTCGAAAGAGAGGAATCGTACGAACTCAGAACAGGAAAGGTGAGAAGCTGTCTATCATGGGAAAAGTACTTTGAAATAGCCAGAGAGGAGGGATGGCTTACTGACATATCAGACGATGAGCCTGAACAGAATTCCACTGATGAAGCAATGGAATCAGCGGGCGATGTCGAGGAGAACAACACTACTGATGCTGCTGATGATGTTCAACCTCCTGCCATGCAAGAGAAACTTGTTTGCAGATGGCAGAAAGTTGTTAAGAGCAGCAGCCAGATAAAAAATCAAGTTCTTCACTTTCCAGCAGCAGTCATCAAGGAAATCTTCATGGAACCAAGATCATATATTGATCTTCATGACACATACTCGGGTATTACGTACCAATGTGTTTTCAAATCCAGGGAGAACATGACGGAGAAGTTTCTGTCAAGGGGCTGGTTAAAATTTGCAAAGGAGAAAGAGCTGTCGAAAGGTGACGTTCTCTTATTCAGTGTAGAGCATCCTCCTGTGGAACGTATATTGGTCAAAGTTGAGAGAGGGCAGCATTGA 804 0.4353 MNKEDLRWCSRGGFVGSSVSTTTRNLKWKNLAIQKVWKQSEDKRDIAEEWRKLHAEAKRRKEEAESSSSRSCQKITRAELMDKYYEYVEREESYELRTGKVRSCLSWEKYFEIAREEGWLTDISDDEPEQNSTDEAMESAGDVEENNTTDAADDVQPPAMQEKLVCRWQKVVKSSSQIKNQVLHFPAAVIKEIFMEPRSYIDLHDTYSGITYQCVFKSRENMTEKFLSRGWLKFAKEKELSKGDVLLFSVEHPPVERILVKVERGQH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06859 267 MobiDBLite consensus disorder prediction 122 141 - -
Vifa1g06859 267 SMART B3_2 168 266 IPR003340 GO:0003677
Vifa1g06859 267 Coils Coil 47 67 - -
Vifa1g06859 267 MobiDBLite consensus disorder prediction 121 156 - -
Vifa1g06859 267 Pfam B3 DNA binding domain 168 261 IPR003340 GO:0003677
Vifa1g06859 267 CDD B3_DNA 169 248 IPR003340 GO:0003677
Vifa1g06859 267 ProSiteProfiles B3 DNA-binding domain profile. 168 266 IPR003340 GO:0003677
Vifa1g06859 267 Gene3D - 146 264 IPR015300 -
Vifa1g06859 267 SUPERFAMILY DNA-binding pseudobarrel domain 168 254 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06859 Vifa-Chr1 1056671096 1056672265 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g06859 B3 3.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06859 - K22410 tpra:123891884 60.4622