Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06851 ATGTATAAACCATTTGTGACATGTGATGATCCAAAAGGAGTTGTTGAGTGTGGAACTATAAGAAGATATAGGTCAAGTTCTCACAAAATGAAGGACAAGACAAAGAGCCGAAAGAGGGCCGAAAATTTAGAGACGAACAAGCAAGTCAAAGAAGAGAAGGTATTGTCAAGAGGCTCGAGTGGAAGAGATTTTGATTCATCGTCTTTGCAGCTTGTGGAGGTGTCTAGAGGCGCTGAGAAATTGAACAAAATGATTAAGTCGTGGTCTAGTGGTTTAAGGTATGATGGAAAGTCGGAAGATATTGCGAAGGATTTGTTAAAAGGAGCTCTTGATTTGCAAGAATCACTAGAGATGCTTCGAAAGGTTCAAGATGCGTCGAGTAGTATTGCTCGTTCGAAGAAAAAACAAGACGAGGAACGTGAAAGGAGTAGAATTGATGCAAAGATGAATGATAGAATTAGGATGACAATGTCTAATCAATTTGTTGAACATAATTCGGCTTATGGTTCTTCGAGTAGTTGTAGAGAGGAACTTAAGAAAGTTATTAAGGAGAGTTTGGTTAGACAAAATCTATTCCAAAGCACAAGCACTTCTGAAGGATTGGATTCAGCTTCAGCTTCAGCGGCTTTTCCTTCTACAAGCTCAAGTCAATCTTCTGTTGTTTGGTATGACAAACTTTCTGATTCTTCATTGTCACCGAGTTTTCCCAAGAAGGAGAAAAGTACCAATCTCGTTGCAAAATTGATGGGATTAGAACAAGCTCCTTCAAGAACATTTCCATCTATTCTGCAAAAACAGACGGAGAATCAAAAGATTGTGAATCAAAAGAGACCAGTATACGAAATTGACACACCGAAGGTAAGAAAGCATAGTTTGGTAGTCGAGAAGGTTAATCCGGAAAGACAAAAGACGCTGAGGGAAATTCTTGAAACCACTCATTTCAATGGATTGTTGAAGAATAGTCCTATTAGAGATAGAGAGCACAAGCTTCACAACCATGTCAATCATTCCAATGATCTTCAAAACAATGATTTTGGTGATTTACCACCGATTGTACTCATGAAACCTCGGCGTGCTTCGTATGAAGAATTTGTAGAAACTTATGAGCCGGTTCCTCGAGAAGACTTGTCTTTTAGAATTCTAAAAGAAAGAGGAGTTCCTTCAAAAACCTTCAATCCAAGGGAAGGTTCAACTGCCAACACGAGAAAAGACATCGAAGAAAATCTATCCAAAAGGGTTATCAAAGAGGAAAAACCGAAGCGCGTCAAAGAGGTTTTTGAAATTGATGTGAAAGAAATCAAACCGGTCGAAAACAAGAAGGTTCAAAAAGTTAGTCAAAGATTACAAGCAAGTGAAACAGTTGATGAAAAATCTAAGGTAAAGAACATTACAAGTAGCAGAAAGCCACTAGAGAAGGATGTTTCAAAAGCTAAAGTTGTAACAAAAGCTCAAGATCAAGGAGAAATCAGGTCTAGTAGTGAAAAGTTGAGGAAGCCGCGAAGTGTGTCGAGAATTGACAAGAACGAGACTCCATCTAGAAAAAGCACTTCTTCGAATTCAAATACCATCATCACAAAACCGAAGACACAAAAGGTTAATAGTTCAAAGGATTCGAAAAAGAGTCCGATGAAGAAGCAAAGATCTACCAACTTGCCTGGAGCAGCTAAACCACTTGATGAACAATTAAGGCAAGAAGAAGTGATGAGTATCAATGTTGCTTGTAAAGATGATTCTGCTGAGATTAAAACAATCACTACAATAACAGAAGATCTCATCACGGAGCATGAAGTAGACACCTTTTCGAATAAGACTCGAGATACTTCTGAGGAGGGCCAGAATTCTTTAGGTGATGATGTTTTGATGCTAAGTTGTGAACATGAAAATGATGCCATCTCTGCCGAGGAACCTCGTGACACCATCAGTATCAGTGAAACTGATATCGAGCCCGACAACGACACTTCTAAGCTGAAATATTTTCTTCTCACAAGTAAATCATTTATTGACCATGCAGCGGAGGTTCTCATTCTTGATGTTGGTTATCCTATTATCCTACCAAAGGTCGAAAGTAAAGGAATAACCAATAGCAGACTCTATTTGGACTGCGCAGACGAACTCGCCGAGAGAAAAAGCCTTCAAGAGTCATCATCACAAGTAGCTCACCCCTTATTGCAAACTTGTGTAGATAATTCAAGATTGCAAATCTCTTTGGGAAGCTTGGTTGATGAAGTTTACAAGGCAATTGAGAATCTGACATCTTATAGTGAAAATTCTGAGACTAAACTTATTTTGGATAACATCTGTGCAATGTTGGAGAGAGATATGAAGTGCAACAATAGAATGATAAATGGAATATGGAACTGTGGTTGGAGGCATGGATTTTCTTTTGATGAAGTTGAACAAGTTGTTAATGAAGTAGTAAACACGGTTTTAGGTGGATTAATTGAGGAGATTATTGTAAATTTATGA 2466 0.3832 MYKPFVTCDDPKGVVECGTIRRYRSSSHKMKDKTKSRKRAENLETNKQVKEEKVLSRGSSGRDFDSSSLQLVEVSRGAEKLNKMIKSWSSGLRYDGKSEDIAKDLLKGALDLQESLEMLRKVQDASSSIARSKKKQDEERERSRIDAKMNDRIRMTMSNQFVEHNSAYGSSSSCREELKKVIKESLVRQNLFQSTSTSEGLDSASASAAFPSTSSSQSSVVWYDKLSDSSLSPSFPKKEKSTNLVAKLMGLEQAPSRTFPSILQKQTENQKIVNQKRPVYEIDTPKVRKHSLVVEKVNPERQKTLREILETTHFNGLLKNSPIRDREHKLHNHVNHSNDLQNNDFGDLPPIVLMKPRRASYEEFVETYEPVPREDLSFRILKERGVPSKTFNPREGSTANTRKDIEENLSKRVIKEEKPKRVKEVFEIDVKEIKPVENKKVQKVSQRLQASETVDEKSKVKNITSSRKPLEKDVSKAKVVTKAQDQGEIRSSSEKLRKPRSVSRIDKNETPSRKSTSSNSNTIITKPKTQKVNSSKDSKKSPMKKQRSTNLPGAAKPLDEQLRQEEVMSINVACKDDSAEIKTITTITEDLITEHEVDTFSNKTRDTSEEGQNSLGDDVLMLSCEHENDAISAEEPRDTISISETDIEPDNDTSKLKYFLLTSKSFIDHAAEVLILDVGYPIILPKVESKGITNSRLYLDCADELAERKSLQESSSQVAHPLLQTCVDNSRLQISLGSLVDEVYKAIENLTSYSENSETKLILDNICAMLERDMKCNNRMINGIWNCGWRHGFSFDEVEQVVNEVVNTVLGGLIEEIIVNL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06851 821 MobiDBLite consensus disorder prediction 36 59 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 450 479 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 512 531 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 127 144 - -
Vifa1g06851 821 Coils Coil 33 53 - -
Vifa1g06851 821 PANTHER OS01G0228800 PROTEIN-RELATED 2 820 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 25 68 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 488 511 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 123 144 - -
Vifa1g06851 821 MobiDBLite consensus disorder prediction 444 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06851 Vifa-Chr1 1055605037 1055607858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06851 648 818 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 32.584 1.30e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06851 - - gmx:100797863 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06851 1 1055605037 1055607858 Vifa1g06851 1 1055605037 1055607858 ECH