Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06847 ATGGATCCTCCAACAAAGAGTTGGAGTATCCATACCCGACCTGAAATAACCTCCCAATACGAAAGCCTCGAACACATCGGATCCGGATCCTACGCCGACGTCTACCGTGGCCGGCGAATCTCCGACGGGAGAATCGTAGCCCTTAAAGAAGTTCACGATCATCAATCAGCGTCGAGAGAAATCGACGCTTTGCGGATTCTTCGGGGCTCCGAAAACGTTGTGTTCATGCATGAGTTCTTCTGGCGAGAAGACGAAGATGCTGTGATCGTTCTCGAGTTTTTGGAGACCGATCTCGCTACTGTGATAAAGGAGGCTGCCGCTGGTGCTGGAAGTGAGGGTCTTGCTGTTGGAGAGGTTAAAGGGTGGATGGTGCAGATTCTTAGTGGGGTTCATGCTTGTCACCGGAATATGATCGTGCATAGAGATTTGAAGCCGGAGAATTTTTTGATTTCGGATAATGGGGTTCTGAAATTAGCAGATTTTGGACAGGCAAGGATACTTGTGGAGTCTGGATTTGATGCATCAAATAGTGAAAATTCATCCCTACATCCTCATGATGCTATTCCCTTATCAGAAAATTCAAACCGGACTGGATTTGAAAATCAAGAGGAGGAGGAGGAGGAGGAAAGAATTAGTCATGAGGAATATTTTAGAGTATTAGATGAGCTGAAAATCAAGAGTCACACATATGATACTGATGATAAGGACACAAACACGCACGACGGTAACAACTCGTGCCTTGCAACATGCACGATTAGCAATGACGACGATGATGATATTTGGAAGAATTCTTTGCCATATGAAGCAGATGAAGAAGGAGGGTATGAGGAGCTTGGTTTTCTCACATCATGTGTTGGAACAAGATGGTTTAAGGCTCCGGAACTACTTTATGGATCGACTAATTATGGTTTTGAGGTTGATCTTTGGTCGTTAGGATGTGTTTTTGCTGAGTTGTTTATATTGGAGCCTCTGTTTCCTGGAACAAGTGATATAGATCAGATTAGTAGAATCATTAGTGTTTTGGGTAATCTGAATGAGGAAGCTTGGAATGGGTGTTCTAAACTTCCTGATTATGGAAGAATTTCTTTTACTAAAGTGGAAAATCCTATTGGTCTTGAAGCATGCATGCCGCATCGTTTGCATGATGAAGTTTCCTTGGTGAAAAAATTGATTTGTTATGATCCAGCTAGGAGAGCCACTGCGGCTGAGTTACTTAACGACAGGTACTTCTCTCAGTTGTGA 1242 0.4348 MDPPTKSWSIHTRPEITSQYESLEHIGSGSYADVYRGRRISDGRIVALKEVHDHQSASREIDALRILRGSENVVFMHEFFWREDEDAVIVLEFLETDLATVIKEAAAGAGSEGLAVGEVKGWMVQILSGVHACHRNMIVHRDLKPENFLISDNGVLKLADFGQARILVESGFDASNSENSSLHPHDAIPLSENSNRTGFENQEEEEEEERISHEEYFRVLDELKIKSHTYDTDDKDTNTHDGNNSCLATCTISNDDDDDIWKNSLPYEADEEGGYEELGFLTSCVGTRWFKAPELLYGSTNYGFEVDLWSLGCVFAELFILEPLFPGTSDIDQISRIISVLGNLNEEAWNGCSKLPDYGRISFTKVENPIGLEACMPHRLHDEVSLVKKLICYDPARRATAAELLNDRYFSQL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06847 413 ProSiteProfiles Protein kinase domain profile. 20 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06847 413 SMART serkin_6 20 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06847 413 Pfam Protein kinase domain 281 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06847 413 Pfam Protein kinase domain 20 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06847 413 PANTHER CELL DIVISION PROTEIN KINASE 19 410 - -
Vifa1g06847 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vifa1g06847 413 SUPERFAMILY Protein kinase-like (PK-like) 12 412 IPR011009 -
Vifa1g06847 413 MobiDBLite consensus disorder prediction 175 197 - -
Vifa1g06847 413 MobiDBLite consensus disorder prediction 175 212 - -
Vifa1g06847 413 Gene3D Transferase(Phosphotransferase) domain 1 109 413 - -
Vifa1g06847 413 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vifa1g06847 413 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vifa1g06847 413 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06847 Vifa-Chr1 1055174191 1055175891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06847 4 412 Core Cell Cycle Gene Families AT4G28980 61.611 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vifa1g06847 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06847 - - tpra:123883153 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06847 1 1055174191 1055175891 Vifa1g06847 1 1055174191 1055175891 ECH