Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06828 ATGCATCAACTCTCCTGCAACACTTCTTCTCAAGCACACCTCATGGGACACTGTACATGCGGTATGTTTCATGGACAAGAAACACAAAACAATTCATTCTCGATGTTATTCTCTAAACCTTATGATGAATCTCTTGAAAACTATTGCTTTACACCTTCTTCAACTTCTTCTGTTGATTGTACTCTCTCACTTGCAACACCTTCCACTCGTTTCACTCAAGATGAAGAGAAACGAAACCGACATGAAAGTCGCTCTGTTAAAAACTTCTGTTGGGATTTACTATCTCCCAAACAGTTCAACACCACTACTCAAACGAAACCTACACGAGGAAGCAATATCAATAATAACATCAACACCAATGATTCTCTCCTTGCTCGCAGATGCGCAAACTGTGACACTACCTCTACACCCCTTTGGAGAAATGGCCCTCGAGGCCCAAAGTCACTATGCAATGCATGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCTGCTGCTACACCGACAGCAGCGGTGGCCGTCGGTGTAATGGAATCGGCTCCGCTGTATAACCACCACCCCAACCACCACCACAGCTCATGGTTTGTACAACCGCAGAACCAGAAGGCACAGTGCTTCTCTCAGGCAATCAGTAACGAATTTCGCTTCATCGATGACTCTGATCGTGATTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCAACGTCACTGATAGAACAAGCTTCGTTCATGACTTTACCAGATGA 759 0.4453 MHQLSCNTSSQAHLMGHCTCGMFHGQETQNNSFSMLFSKPYDESLENYCFTPSSTSSVDCTLSLATPSTRFTQDEEKRNRHESRSVKNFCWDLLSPKQFNTTTQTKPTRGSNINNNINTNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPTAAVAVGVMESAPLYNHHPNHHHSSWFVQPQNQKAQCFSQAISNEFRFIDDSDRDSENGIPFLSWRLNVTDRTSFVHDFTR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06828 252 PANTHER GATA TRANSCRIPTION FACTOR 18 13 252 IPR044272 GO:0003700|GO:0009908
Vifa1g06828 252 Gene3D - 124 196 IPR013088 GO:0006355|GO:0008270
Vifa1g06828 252 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Vifa1g06828 252 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
Vifa1g06828 252 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Vifa1g06828 252 SMART GATA_3 122 176 IPR000679 GO:0006355|GO:0043565
Vifa1g06828 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 168 - -
Vifa1g06828 252 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06828 Vifa-Chr1 1053057461 1053058486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06828 1 252 C2C2-Gata Transcription Factor Family AT3G50870 42.122 8.11e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g06828 GATA 6.2e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06828 - - mtr:11405635 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06828 1 1053057461 1053058486 Vifa1g06828 1 1053057461 1053058486 ECH
Vifa1g06828 1 1053057461 1053058486 Vifa4g02455 4 740083643 740084496 PCT