Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06820 ATGAATAAACTTACGAATTTAGAGGCAATCGACCTAAGTGGGTGCAAAAAGTTGAAGAACCTCCCTGATTTGTCTGGCGCGCCAAAACTCAAACAGTTGAGCCTTTCTGGTTGTGAAGAATTACTTGAAGTTCAGGCTTCTTCTTTTTCTAAGGACACACTTGTTACTTTGCTACTGGATGGGTGCAAAAAAGTGCCAAGTCTTATGGGTGAGAAGCATTTAAAATCTCTAGCAAACTTCAGTGTCAAAGGTTGTTATGGTCTGAAGGAATTTTCATTATCTTCGGATGCACTAAGAAGGTTGGATTTGAGCAATACAGGAATCGAAATATTGCACCCATCAATTGGTGGTATGACCAAGCTTTATTCGTTAAATCTAGAAGGTTTAAATTTAACAAGTCTACCGATTGAATTGTCATACTTGGCACTTACTGAACTTCGGGTTTCTAAGTGCAGTGTAGTAACCAAATCAAAGTTAAAAGCCCTATTTGATGGTCTGAGCTCACTAAGATTACTACACTTGAAAGACTGTGGTAACTTGTTTGAACTCCCTGCAAACATTAGTTCTTTATCATCATTGCAAGAGTTAAGACTAGATGGAAGCAATGTGAAGGAGTTGTCTGCTAGCATCAAATACCTCTTAGAGCTAGAAGTTCAGTCTTTAGACAATTGCATATCCACTTTGAAGACTTTTTCAGTAAACATGATTGGACAGAAGAAATACATTTCGATAACGAATAGCATTAAGATGAAACTGGATGGACCCTCCCTTGCCTGCATGACGGAAGATGCCATGTTAACAATGAAAAGTGTTGCCTTTCACAATGTATTAGTGAGAAAGTACAGATTCCAAACCCACAGCTACAATTATAATAGCGCCGAGGTATGTCTGCCAGGACACAGAATTCCAAGTCAGTTCAAACAACGATCCACCACATACGCCTCCTTAACTATTGACGTTCTCAACTGGGTGGGCTTTATTTTAGCAGTTGTTGTTACTCCATCTAACATAACACAAGAGGGTGAATACTTTGTTGGAATCCTATGTCAGTGCTATTCGGAAGATGGAAGGACGGAAGTGGGAAATAAGTCTAAGTGGAAGCCTAAACTGGTTACAGATTTGGAAATGGATCATATTTTTGTATGGTATGATCCATTCCTTTGTGACACCATACTCAGAAGGAATGAAAGAAAGGTTTCTTTTAAATTCTATATTACAACTTATACAACTAGTGGCAGAGAACTTGGTAACCTTTTAAAAATCAAAGAGTGTGGGGTTTGTCCAATTTACTACTCAGAAAGTCAGAAGGTTTTAGGCACAGGGAATTTAGACAAGGACTTGGAAAAAGAGTTGTATCAGGAAATTGAACATGAGAGATCAGTTGAAGGCTATGATGAGGGAGAAGGCATTGATATTGAACCAAATGACAAGGAAGGCACGAGCATACAGAACCAAGAGTTGGACTGTTTAATCGTCTCTAAAGATACTCAGGTACATGACGATCCTCAAGAGAAAGTAAATTTGAAAGATGATGATAATTCCAAAGAATTGATGAAATCTGAGATTCTTCATTATAGTACTTCTTTGAAGTCTGGAGAGGAAGATTCTACTGAAGGAAGTTCTGATGCAGAATTGTCAATCAATAAAGAAATTAAGAGAGACGACTCTTCTGGTGTTGATGAATCACACTCTTCTACTTTTCCAACAAGATTGAGTTTAACAAACAAGTTGAAGATATACGAGGAAACTAAAAATCTTAAACCATCACTACCATCATTAGTGAAGATTCCATCTCCTTCTTATACTAATTTGTTACAACTACAAGAAGCTCCCAGCAAACTAATCCCAAACTCCTCAATGGATGCTGAAAGTTCTTCAAGTAAACCTTCTTCTTCAAAGGGTCAAATAAGAACTGAAGAAAACTCTTCAAAATTAAAGAAATTGAGTACTCAAGAACATTCTCCTGTCGATTATTCTGAATACAAGAAAACTCTTGAAGAAGACCCTTGGGCAATCATAGAGAAACTCTTATGTGATGAACATGGTAGTACTTCACAGGCTTCTCAATCTACAACACAAGCAGAATCTACTGAAACTCCGAACGAGTCAATCGAGAAGCTGCTTGATGAATTACGAGAATTGGCATTTTCTAAGAACTTATTGAAAAATTTAAGCAATGATGTGACCCTTGAAGAAGAGGTAAAAGCTTTATTAGTTAAACTCAATGATAGAGCTAATGAGCTTTCTGTGAAACAAAATTCTGGTATTACTGATTTCACCACATTCTTTAATAAAGCCACGGTCAATATTGATGAAGAAAAACGGAGCAATGTTACTCTTCAACAACTTAATGTGGACGATGCAGATTCAAGAGCCAAGCTTCAAGAATCTCAAAACAAAATAAAGAAGTTCAAAGAGTCCATCGTTGCTGGTGAGGATAAGATTAAGGGGGCCGGAGTGCGTCGATATTGTGCTGTTGCAGAAGCAGTTGAGTTGTCGCTCGCGGTCGCCGGCGTGTCGTCGGAGGCCAGTCAAGTAATGGATTTGGAATGA 2553 0.3807 MNKLTNLEAIDLSGCKKLKNLPDLSGAPKLKQLSLSGCEELLEVQASSFSKDTLVTLLLDGCKKVPSLMGEKHLKSLANFSVKGCYGLKEFSLSSDALRRLDLSNTGIEILHPSIGGMTKLYSLNLEGLNLTSLPIELSYLALTELRVSKCSVVTKSKLKALFDGLSSLRLLHLKDCGNLFELPANISSLSSLQELRLDGSNVKELSASIKYLLELEVQSLDNCISTLKTFSVNMIGQKKYISITNSIKMKLDGPSLACMTEDAMLTMKSVAFHNVLVRKYRFQTHSYNYNSAEVCLPGHRIPSQFKQRSTTYASLTIDVLNWVGFILAVVVTPSNITQEGEYFVGILCQCYSEDGRTEVGNKSKWKPKLVTDLEMDHIFVWYDPFLCDTILRRNERKVSFKFYITTYTTSGRELGNLLKIKECGVCPIYYSESQKVLGTGNLDKDLEKELYQEIEHERSVEGYDEGEGIDIEPNDKEGTSIQNQELDCLIVSKDTQVHDDPQEKVNLKDDDNSKELMKSEILHYSTSLKSGEEDSTEGSSDAELSINKEIKRDDSSGVDESHSSTFPTRLSLTNKLKIYEETKNLKPSLPSLVKIPSPSYTNLLQLQEAPSKLIPNSSMDAESSSSKPSSSKGQIRTEENSSKLKKLSTQEHSPVDYSEYKKTLEEDPWAIIEKLLCDEHGSTSQASQSTTQAESTETPNESIEKLLDELRELAFSKNLLKNLSNDVTLEEEVKALLVKLNDRANELSVKQNSGITDFTTFFNKATVNIDEEKRSNVTLQQLNVDDADSRAKLQESQNKIKKFKESIVAGEDKIKGAGVRRYCAVAEAVELSLAVAGVSSEASQVMDLE 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06820 850 MobiDBLite consensus disorder prediction 615 638 - -
Vifa1g06820 850 MobiDBLite consensus disorder prediction 615 660 - -
Vifa1g06820 850 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Vifa1g06820 850 MobiDBLite consensus disorder prediction 639 660 - -
Vifa1g06820 850 MobiDBLite consensus disorder prediction 682 701 - -
Vifa1g06820 850 MobiDBLite consensus disorder prediction 525 544 - -
Vifa1g06820 850 Gene3D Ribonuclease Inhibitor 92 300 IPR032675 -
Vifa1g06820 850 MobiDBLite consensus disorder prediction 682 702 - -
Vifa1g06820 850 SUPERFAMILY L domain-like 3 228 - -
Vifa1g06820 850 Coils Coil 794 814 - -
Vifa1g06820 850 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 62 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06820 Vifa-Chr1 1052228628 1052231876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06820 4 217 WRKY Transcription Factor Family AT4G12020 29.302 3.26e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06820 - - cam:101489032 939.873