Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06810 ATGGAAACAAACATTTCACCAACAACTTTAGGTTACAATAGAGATTCTTCTTCTTCTTCACCAATTCCACCTCAAACAACTCCACCTCAAACTAACACAAACACATTAGTCTTCAACAATCTTCATCCAGATCCAGATCTAATTGTTACAACAAGCACTTCTACTACTCCAATAACACCACAACAGGCAACAACAACAACAGCAGCAACAACAACAACAAAAATATATTACCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGAAGCTACGTGGTAGATGGATGTGGCGAGTTTATGCCAAGCGGTGAAGAAGGTTCCCCACAATCATTCAAATGTGCTGCTTGTGATTGTCATAGAAACTTTCATCGAAAACATGTTCAATTACCACAGCAACAACAACAAGAACAACAACAGCAACAACATCAACAACAAACGCAACATGTTGTTAATAACGGTCACGTTCAGTTTAACACACCTTCTTCTTCATCTCAAAGATTCTCACACCCAACTACTTCCGGACATGTTCCACCTTTGATGATGACTTTTGGATCAGGTCCAGCTGAATCATCAAGTGAAGATCTCAACATGTTGGGTGCACAATTTTCAATACAAACGCAGCAGCAACAAGGTTCTAAGAAGAGGATAAGGACGAAATTCTCACAGCTTCAAAAGGATAAGATGATGGAGTTTGCTCAAAAGATTGGGTGGAAGATCCAGAAACATGATGAACAAGAAGTTCAACAGTTTTGTTCTCAATTTGGTATCAAAAGACAGGTCTTCAAAGTTTGGATGCATAATAATAAACAAGCTATGAAAAAAACAGGAAATGTAAGCTTAGTTTAG 846 0.3877 METNISPTTLGYNRDSSSSSPIPPQTTPPQTNTNTLVFNNLHPDPDLIVTTSTSTTPITPQQATTTTAATTTTKIYYRECLRNHAASMGSYVVDGCGEFMPSGEEGSPQSFKCAACDCHRNFHRKHVQLPQQQQQEQQQQQHQQQTQHVVNNGHVQFNTPSSSSQRFSHPTTSGHVPPLMMTFGSGPAESSSEDLNMLGAQFSIQTQQQQGSKKRIRTKFSQLQKDKMMEFAQKIGWKIQKHDEQEVQQFCSQFGIKRQVFKVWMHNNKQAMKKTGNVSLV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06810 281 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g06810 281 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 126 IPR006456 -
Vifa1g06810 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 77 126 IPR006456 -
Vifa1g06810 281 MobiDBLite consensus disorder prediction 1 65 - -
Vifa1g06810 281 Pfam ZF-HD protein dimerisation region 75 127 IPR006456 -
Vifa1g06810 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 271 - -
Vifa1g06810 281 MobiDBLite consensus disorder prediction 29 65 - -
Vifa1g06810 281 FunFam Zinc-finger homeodomain protein 2 201 274 - -
Vifa1g06810 281 Gene3D - 200 275 - -
Vifa1g06810 281 NCBIfam homeobox domain, ZF-HD class 213 270 IPR006455 -
Vifa1g06810 281 MobiDBLite consensus disorder prediction 127 147 - -
Vifa1g06810 281 SUPERFAMILY Homeodomain-like 207 274 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06810 Vifa-Chr1 1050234225 1050235070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06810 55 274 ZF-HD Transcription Factor Family AT2G18350 49.782 3.76e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa1g06810 ZF-HD_dimer 4.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06810 - - mtr:11413632 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06810 1 1050234225 1050235070 Vifa1g06810 1 1050234225 1050235070 ECH