Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06807 ATGGATCGAATCATCGGCGAGAAGTTCAAGCTAGGTCGAAAGATCGGAAGCGGATCCTTCGGTGAAATCTATCTCGCTACGCATATTGATACGTTCGAGATCGTTGCTGTGAAGATCGAGACTGGTAAAACGAAGCATCCGCAATTGCTTTATGAAGCTAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAACGTGCTTGTTATGGATTTGTTGGGGCCAAGTCTAGAGGATCTTTTTGTTTACTGTGGGAGGAAGTTCTCTCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGGATAGAGTATGTGCATTCTAAAGGATTCCTTCATAGGGATATCAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTTTATGTAATTGATTTTGGGCTTGCTAAACGATATCGGGACTCCACAACCAATCGACATATCCCCTACAGGGAGAACAAAAATTTAACAGGTACTGCACGCTATGCAAGCTGCAATACTCATCTTGGGATTGAGCAAAGCCGGCGGGATGATTTGGAGTCACTAGGGTATGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTTAAGGCTGCGACAAAGAAGCAAAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCTCACCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGAGAGTTATTTGCTCGTGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTAAAATACCAGCAGTCTCAAAAGAGTAGAGTCCAGCCTCACATATCCCCGGTTCCTGTAGTGAGCAATAATCGGGCAATGGCCATGGATGTTGATAACCAACAAGGGAATGTCTCAGCCGAGCAAATTAAATCAGACAATGCTACTTCTTCTGGTGTTAAGTTTCAATTTAAATCATCCGGTGGTAAAAATATAGCTTCTGAAAACCCTCTTGGCAAAAATATTTTTGGTGAAGCTCCCATCCCATCTACTTCATACTCTTTCGAGGCATCAAGAAGAAACTCCTTGAAGCCTTCCCCGTCCATTGAAGCTGCAAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTGGGATGAATGTTTTGCACTTAAGTTCTGCTAAGTGA 1275 0.4212 MDRIIGEKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRVQPHISPVPVVSNNRAMAMDVDNQQGNVSAEQIKSDNATSSGVKFQFKSSGGKNIASENPLGKNIFGEAPIPSTSYSFEASRRNSLKPSPSIEAANHRHGQGSSKIGPSSSGMNVLHLSSAK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06807 424 Gene3D Transferase(Phosphotransferase) domain 1 1 343 - -
Vifa1g06807 424 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06807 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa1g06807 424 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06807 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vifa1g06807 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06807 424 PANTHER CASEIN KINASE-RELATED 13 343 - -
Vifa1g06807 424 MobiDBLite consensus disorder prediction 379 424 - -
Vifa1g06807 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa1g06807 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa1g06807 424 FunFam Casein kinase I isoform delta-like 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06807 Vifa-Chr1 1050106992 1050110709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06807 9 213 EF-hand Containing Proteins AT4G23650 29.384 1.15e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa1g06807 Pkinase 6.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06807 K08960 - gmx:100805890 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06807 1 1050106992 1050110709 Vifa1g06807 1 1050106992 1050110709 ECH
Vifa1g06807 1 1050106992 1050110709 Vifa1g06807 1 1050106992 1050110709 PCT