Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06805 ATGGCTTCTTCTTCAATTCGTCCCTCGCTTTCTTCATTCAACAAGTTTCCTTCTTTCTCTTCACGCAACCTTTCTCTCAGACTCTCTCTTTTTCATCTTCGCAATGGTGTTAGACCACTTCCCCATAATTTTGGTCTTAAAGCATCTAGGTTGTTGAGGCATGATAGTAGATGTATGAGATTGATGTCATCTGGGAGTATGTCTCCATATGCAACGCAGGAAAATGCATTAGATTGGGTGAAGCAGGACAAGAGAAGAATGCTTCATGTCGTGTATCGTGTCGGGGACTTGGATAAGAGCATAAAATTTTATACAGAGTGTCTAGGAATGAAGGTGCTCAGAAAACGTGACATGACAGAGGAGAGATATACTAATGCTTTTCTTGGATATGGGCCTGAGGATGCACACTTTGCTATTGAACTAACATACAATTATGGGATTGAAACGTATGACATTGGAACTGGATTTGGCCATTTTGGCGTTGCTTTGGATGATATTCCAAGAGTTGTGGACATTGTCAAAGCTAAGGGTGGCATAATAACTAGAGAGCCGGGTCCTATCAAGGGAGGCAACTCAACTATTGCAGTTATTGAAGACCCTGATGGGTATAAACTTGAACTTTTGGAAAGGGCTCCCTCTCCCGAACCCTTGTGCAAAGTAATGCTTCGGGTGGGTGATCTTGATCGATCCATAAAATTTTATGAGAAGGCTGTTGGTATGGAGCTGCTTCGTACACAAGACGATCCAGAATCCAAGCGTACCGTTGCAATAATGGGTTATGGTCCTGAAGAAAAAAACACTGTTTTGGAATTGACTTACAATTATGGTGTCAGGAAATATGATAAAGGAGATGCATATGTTCAGATTGCAATAGGCACAGATGATGTGTACAAAACTGCTGAAGCAATTAAACTTGCTGGAGGAAAGATTACCCGTGAAGCTGGACCGGTACCTGGTTACAGTACAAAAATTACATCATGCGTGGATCCTGATGGTTGGAAAACGGTTTTTGTAGATAATCACGATTTTCATAAGGAGGTTGAGTAG 1047 0.4155 MASSSIRPSLSSFNKFPSFSSRNLSLRLSLFHLRNGVRPLPHNFGLKASRLLRHDSRCMRLMSSGSMSPYATQENALDWVKQDKRRMLHVVYRVGDLDKSIKFYTECLGMKVLRKRDMTEERYTNAFLGYGPEDAHFAIELTYNYGIETYDIGTGFGHFGVALDDIPRVVDIVKAKGGIITREPGPIKGGNSTIAVIEDPDGYKLELLERAPSPEPLCKVMLRVGDLDRSIKFYEKAVGMELLRTQDDPESKRTVAIMGYGPEEKNTVLELTYNYGVRKYDKGDAYVQIAIGTDDVYKTAEAIKLAGGKITREAGPVPGYSTKITSCVDPDGWKTVFVDNHDFHKEVE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06805 348 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 86 210 IPR037523 -
Vifa1g06805 348 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 87 207 IPR004360 -
Vifa1g06805 348 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 220 334 IPR004360 -
Vifa1g06805 348 CDD GlxI_Ni 87 208 - -
Vifa1g06805 348 FunFam Lactoylglutathione lyase 213 348 - -
Vifa1g06805 348 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 218 340 IPR029068 -
Vifa1g06805 348 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 216 340 IPR037523 -
Vifa1g06805 348 ProSitePatterns Glyoxalase I signature 2. 153 165 IPR018146 GO:0004462|GO:0046872
Vifa1g06805 348 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 86 212 IPR029068 -
Vifa1g06805 348 ProSitePatterns Glyoxalase I signature 1. 89 110 IPR018146 GO:0004462|GO:0046872
Vifa1g06805 348 Gene3D - 58 212 IPR029068 -
Vifa1g06805 348 NCBIfam lactoylglutathione lyase 86 211 IPR004361 GO:0004462|GO:0046872
Vifa1g06805 348 Gene3D - 213 348 IPR029068 -
Vifa1g06805 348 PANTHER LACTOYLGLUTATHIONE LYASE 64 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06805 Vifa-Chr1 1049997633 1050001085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06805 219 337 Calmodulin-binding Proteins AT1G08110 26.207 2.23e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06805 K01759 - gmx:100802155 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06805 1 1049997633 1050001085 Vifa1g06805 1 1049997633 1050001085 ECH
Vifa1g06805 1 1049997633 1050001085 Vifa1g06805 1 1049997633 1050001085 PCT