Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06797 ATGGGTTGCATTTACTCAAGAGTTTGCATAGGTGACACTTGCAAGGGTTCTAGCATAAACGGTGATGCAATTTCAGTTTCAAGACAAGAGTTTCATGAAGTTAATCCATTTTCACCATTTGAAGGTGGAGTTAGAGATCAGTTGAATCAGTTAAGCTTAACAAGAGATTCAGAAGCTGGAATTAGAAGATTAGCTAGGGTTTCATCACAGTTTTTACCTGCTGATGGGTCAAGAACAGTGAAGATTGGTTCTTATAACTATGAATTACGGTATTCTTATCTTTCACAACGTGGGTATTATCCTGATGCTCTTGATAAAGCGAATCAGGATAGTTTTTGTATTCATACACCTTTTGGAAATGATGTTAATGATCATTTTTTCGGGGTTTTCGATGGCCATGGTGAGTTTGGAGCAGAGTGTTCGCAGTTTGTGAAGCGTAAGCTTTGTGAGAATTTGTTGAGGAACTCTAAGTTTAGTGTTGATGCTATTGAGGCTTGTCATTCCGCTTTTTTAGCCACGAATTTGCAGTTGCATAGTGATATTTTAGATGATAATATGAGTGGGACGACCGCGATAACTGTTTTGGTTAGAGGGAGAACGGTTTATATAGCGAATTGTGGGGATTCGAGGGCGGTTATAGCTGAGAAGAGAGGGAAAGATGGTGGTGGTGAGGGTGGTGTTGTGGCGGTTGATTTGTCGATAGATCAGACACCGTTTAGGGTTGATGAATTGGAAAGAGTGAAGCTTTGTGGTGCCAGGGTACTTACTTTGGATCAAATTGAGGGGTTAAAGAATCCTGATGTTCAATGTTGGGGTAGTGATGAAGAAGGCGATGATGGTGATCCTCCGAGGTTGTGGGTTCCGAATGGCATGTATCCGGGTACTGCTTTTACGAGGAGTATTGGTGATTCTATTGCGGAGAGTATTGGTGTTGTTGCTGTTCCTGAGATTGTTACTTTTGAACTCACACATAATCATCCATTTTTTGTTGTTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGCCAGACTGTGGTTGATATGGTTGCAAAATTCAAAGATCCACGCGATGCTTGTGCTGCAATAGTAGCAGAATCTTATCGACTTTGGCTACAGTATGAGACTCGTACAGATGATATTACAGTAATCATTGTGCATATAAATGGCCTAAATGAACCCGTTGTTGCTCACACGGCAACTTCTCGCGATATTTTACAAACTCCTGTCCCTCAGGTTGTAGAGGTGACAGGTTCAGAATCTCCTTCCACCTTTGGATGGAATGCTAGGAACCATCGCGTGAGGCAAGAATTGTCAAGGGCGCGTCTTCGAGCAATTGAAAATTCCCTTGAGAATGGACAAGGTTGGGTTCCTCCATCTTCAGCACACAGAAAGACATGGGAGGAAGAAGCACACATAGAGCAGGCATTGCAGGATCATTTTCTCTTCCGAAAACTTACCGATTCTCAGCGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAATTCGAACCCGAGGATATTATAGTCAAACAGGGCGGGGAAAGTGACTGTTTTTATGTTGTTGGAAGCGGAGAGTTTGAGGTCTTGGCGACTCAGGAAGAAAAAGATGGGGAAGTACCTAGGGTTTTGCAGAGCTACACAGCCGAAAAACTATCGTGCTTCGGGGAACTTGCTCTTATGTACAACAAACCGCTCCAGGCTTCTGTGCGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCGGAATTCTCTAATTTATCATCATTGAAGTTACTTCGGTCTGTAGATCTCCTCTCAAGATTATCAATTTTACAACTGAGTCAAATTTCCGATTCCCTTACGGAAGTTTCGTTCTCAAGTGGACAGACAATAATTGATAAAAGTGAAGTTCTTGCATTGTACATCATCCAAAAGGGACGAGTAAAAATAACTTTCGATGCCGCTTTGTTGACGAGTCCAAATACCAATAGTCTCAATAATGACATCCAAAATGAGGATGATGATGACAAACAGAGCGGAACAGAATTGTCGATAGAGAAGCCCGAGGGAAGCTATTTCGGTGAATGGTCCCTTCTTGATGAACACATTGGTTCCTTAACTGCGGTTGCTGTGGACGATGTTGTATGTGCTTTACTAACAAAGGAGAAATTTGAATCAGTTATTGGCTCCTTACAAAAGATTACTCAAGAGGATCACAAGTCGAGGGACAATTCCAAGGAATTGACTAAAAACTTTGAACTCTCATCCCTTGATAAAGTCCAGCTCACGGATTTGGAGTGGAGAAAGACACTATATTCCACTGATTGTTCTGAGATTGGACTCGCAAACTTAAGAGACTCAGAAAATGTGCTTACTTTGAAGAAGTTTTCCAAATCAAAAGTGAAAAGACTAGGAAAAGAATCACAAGTTTTGAAAGAGAGAGATTTGATTAAGGGTATGAGCTCTTCAGCTTGTGTACCACAAGTCTTACGCACCCTTGCTGACCGCTCATGTGCTGGAATACTGCTAAACACTCGTCTTGCCTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGCGAATCAGCAGCCCAATTTTGTGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTATAGAGGTGTTTCATCTGATGTTTTGATGTTGGATCAAACAGGACAGATACAGCTGGTAGACTTCAGATTTGGAAAGAAGCTATCTGATGAGAGAACATTCACAATCTGTGGGATGGCAGATTCCCTAGCTCCAGAGATTATTTTGGGAAAAGGCCATGGTTTTCCTGCCGACTGGTGGGCGTTGGGAGTTTTAGTGTATTTTATGTTACGGGGCGAAATGCCGTTTGGATCATGGAGAGAAAACGAACTCGATACAGTTGCCAAAATTGCTAAAAGGAAACTAAATCTTCCAGACACTTTTAGCCCTGAAGCTGCTGATCTCATCTCCAAGTTACTTGAGGTGGAAGAAAGTACAAGACTTGGTAGCCAAGGTCCCGATTATGTTAAGAATCACTCGTGGTTTAATGGTATTAACTGGGAAGCGATTCGAAACCGCACTTTTCCAGTTCCTCCGGAAATTACTTCTCGCGTAACTCAATATTTAGAAGCTCGTTCAGAGGATTGCAGTGCTTCTACGGGATCCCCGTCACAGGAAGTAGAAGAACTCAATGTGCCTGAATGGCTTGAAGATTGGTAG 3240 0.4201 MGCIYSRVCIGDTCKGSSINGDAISVSRQEFHEVNPFSPFEGGVRDQLNQLSLTRDSEAGIRRLARVSSQFLPADGSRTVKIGSYNYELRYSYLSQRGYYPDALDKANQDSFCIHTPFGNDVNDHFFGVFDGHGEFGAECSQFVKRKLCENLLRNSKFSVDAIEACHSAFLATNLQLHSDILDDNMSGTTAITVLVRGRTVYIANCGDSRAVIAEKRGKDGGGEGGVVAVDLSIDQTPFRVDELERVKLCGARVLTLDQIEGLKNPDVQCWGSDEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAESIGVVAVPEIVTFELTHNHPFFVVASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNEPVVAHTATSRDILQTPVPQVVEVTGSESPSTFGWNARNHRVRQELSRARLRAIENSLENGQGWVPPSSAHRKTWEEEAHIEQALQDHFLFRKLTDSQRHVLLDCMQRVEFEPEDIIVKQGGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQSYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLTEVSFSSGQTIIDKSEVLALYIIQKGRVKITFDAALLTSPNTNSLNNDIQNEDDDDKQSGTELSIEKPEGSYFGEWSLLDEHIGSLTAVAVDDVVCALLTKEKFESVIGSLQKITQEDHKSRDNSKELTKNFELSSLDKVQLTDLEWRKTLYSTDCSEIGLANLRDSENVLTLKKFSKSKVKRLGKESQVLKERDLIKGMSSSACVPQVLRTLADRSCAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSSDVLMLDQTGQIQLVDFRFGKKLSDERTFTICGMADSLAPEIILGKGHGFPADWWALGVLVYFMLRGEMPFGSWRENELDTVAKIAKRKLNLPDTFSPEAADLISKLLEVEESTRLGSQGPDYVKNHSWFNGINWEAIRNRTFPVPPEITSRVTQYLEARSEDCSASTGSPSQEVEELNVPEWLEDW 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06797 1079 Pfam Protein kinase domain 786 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06797 1079 SMART cnmp_10 481 604 IPR000595 -
Vifa1g06797 1079 SMART cnmp_10 607 746 IPR000595 -
Vifa1g06797 1079 SUPERFAMILY cAMP-binding domain-like 462 591 IPR018490 -
Vifa1g06797 1079 MobiDBLite consensus disorder prediction 666 685 - -
Vifa1g06797 1079 MobiDBLite consensus disorder prediction 1054 1079 - -
Vifa1g06797 1079 SMART serkin_6 776 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06797 1079 ProSiteProfiles cAMP/cGMP binding motif profile. 481 590 IPR000595 -
Vifa1g06797 1079 CDD PP2Cc 106 387 IPR001932 -
Vifa1g06797 1079 Gene3D Jelly Rolls 598 749 IPR014710 -
Vifa1g06797 1079 Gene3D Phosphorylase Kinase; domain 1 766 1042 - -
Vifa1g06797 1079 SUPERFAMILY Protein kinase-like (PK-like) 759 1049 IPR011009 -
Vifa1g06797 1079 CDD CAP_ED 481 590 IPR000595 -
Vifa1g06797 1079 CDD CAP_ED 607 732 IPR000595 -
Vifa1g06797 1079 SUPERFAMILY cAMP-binding domain-like 600 737 IPR018490 -
Vifa1g06797 1079 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 472 1043 - -
Vifa1g06797 1079 SUPERFAMILY PP2C-like 78 390 IPR036457 -
Vifa1g06797 1079 ProSiteProfiles cAMP/cGMP binding motif profile. 607 748 IPR000595 -
Vifa1g06797 1079 Pfam Cyclic nucleotide-binding domain 499 591 IPR000595 -
Vifa1g06797 1079 Pfam Cyclic nucleotide-binding domain 626 731 IPR000595 -
Vifa1g06797 1079 ProSiteProfiles PPM-type phosphatase domain profile. 90 387 IPR001932 -
Vifa1g06797 1079 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Vifa1g06797 1079 Pfam Protein phosphatase 2C 117 366 IPR001932 -
Vifa1g06797 1079 Gene3D Jelly Rolls 457 597 IPR014710 -
Vifa1g06797 1079 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 455 595 - -
Vifa1g06797 1079 PRINTS cAMP-dependent protein kinase signature 502 516 - -
Vifa1g06797 1079 PRINTS cAMP-dependent protein kinase signature 552 561 - -
Vifa1g06797 1079 PRINTS cAMP-dependent protein kinase signature 727 739 - -
Vifa1g06797 1079 PRINTS cAMP-dependent protein kinase signature 517 531 - -
Vifa1g06797 1079 ProSiteProfiles Protein kinase domain profile. 768 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06797 1079 Gene3D - 83 388 IPR036457 -
Vifa1g06797 1079 Gene3D Transferase(Phosphotransferase) domain 1 853 1040 - -
Vifa1g06797 1079 SMART PP2C_4 91 385 IPR001932 -
Vifa1g06797 1079 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 85 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06797 Vifa-Chr1 1048567359 1048573210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06797 1 1079 PP2C-type Phosphatase Gene Family AT2G20050 66.546 0.0 1450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Vifa1g06797 PP2C 9.9e-33 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06797 - - psat:127117483 1982.22