Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06796 ATGGCACATTTCCCGACTAACCTCAAAGTTCTTGCCATTCATCATGACACCATTCTTCTTGATCAAATTCAGCAAATGTGTGACCGCTGTCATTATCTACTAACCAAATGCACTTCACCTTCTGATGCTCTTCATCTTCTTGCGCAAAGAAATCATTATTTTGATATCATGTTGATTGATGTTGGAATGCCAAGCATGGAGTCGTATGAGTTTCTTAGATATATAACCCTACAACACAACATCCCTGTCATTGTTATGTCTTCTGATGCAACAAATACTTCTGTCGTCATGGAGTCTATAATTCATGGTGCTAGTGATTACTGGCTTCAACCTTTAAATGAAAAACTATTCAAAACTATGTGGCAGCATGCTGCCAGAAAAAGTTTAACTGAAAATAAAGAACATGATGTTCTTGGATTCTTGAAGGCTCAAAGTCACAAAGAACCTGAAGTTGTTGGAATCATGAAGGTTCAAAGCCCTAAAGAACATGAAGTTGTTGGATTCTTGGAGGCTCCTCAGCATGAAAGAAAACGGGAGAGAGAAGATGATAATCCTCCAAAAGAAAAAAGTGCAAAAAAGAGTCGGTTATCATGGACGCCGCAATTGCACCAACAGTTTGTTAATGCTGTAAACCAACTTGGCTTGGATGAGGCAAAACCAAGAAAGATTCTGAAAATAATGGATGTTTGTGGTTTAACAACATCTCAGGTTGCAAGTCATTTGCAGAAGTATAGAGACTATTTGAAGAGAGCACCTTGTGGAAAAAAGTCAAAGAAAATTTCAAGAATTGACACTCCAACTGAGTGTATGAATAAAACATCATTAGAATCTGAACATGCTCAGTCCCAAAGTTCTCAACTGAACTCAACCCTTCAAAGAGATAATAATTCTGAAACACAACAACATTCAACTGATGTTACTAATTATCAAGTCTCTGACACTGGCTACAATTATGAAACACAAAAGCATTCAACAGATGTTGGCGATTATCAAGTCTCCGATTTTCCTGATCCATCATCTGACTTGTTCATAGATTATGATGAGTTAATATCGTTATTATTATGA 1065 0.369 MAHFPTNLKVLAIHHDTILLDQIQQMCDRCHYLLTKCTSPSDALHLLAQRNHYFDIMLIDVGMPSMESYEFLRYITLQHNIPVIVMSSDATNTSVVMESIIHGASDYWLQPLNEKLFKTMWQHAARKSLTENKEHDVLGFLKAQSHKEPEVVGIMKVQSPKEHEVVGFLEAPQHERKREREDDNPPKEKSAKKSRLSWTPQLHQQFVNAVNQLGLDEAKPRKILKIMDVCGLTTSQVASHLQKYRDYLKRAPCGKKSKKISRIDTPTECMNKTSLESEHAQSQSSQLNSTLQRDNNSETQQHSTDVTNYQVSDTGYNYETQKHSTDVGDYQVSDFPDPSSDLFIDYDELISLLL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06796 354 MobiDBLite consensus disorder prediction 165 198 - -
Vifa1g06796 354 Pfam Myb-like DNA-binding domain 196 245 IPR001005 -
Vifa1g06796 354 SMART REC_2 8 120 IPR001789 GO:0000160
Vifa1g06796 354 MobiDBLite consensus disorder prediction 167 194 - -
Vifa1g06796 354 ProSiteProfiles Response regulatory domain profile. 9 125 IPR001789 GO:0000160
Vifa1g06796 354 SUPERFAMILY CheY-like 6 134 IPR011006 -
Vifa1g06796 354 CDD REC_typeB_ARR-like 10 125 - -
Vifa1g06796 354 FunFam Two-component response regulator 189 251 - -
Vifa1g06796 354 SUPERFAMILY Homeodomain-like 191 250 IPR009057 -
Vifa1g06796 354 Gene3D - 190 251 - -
Vifa1g06796 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Vifa1g06796 354 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 286 IPR045279 GO:0009736
Vifa1g06796 354 Pfam Response regulator receiver domain 10 115 IPR001789 GO:0000160
Vifa1g06796 354 MobiDBLite consensus disorder prediction 272 311 - -
Vifa1g06796 354 Gene3D - 5 133 - -
Vifa1g06796 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 249 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06796 Vifa-Chr1 1048537902 1048539164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06796 4 250 Response Regulator Gene Family AT2G25180 33.852 6.22e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa1g06796 Response_reg 3.3e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06796 - K14491 psat:127104423 420.239