Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06795 ATGAGAACTACTAGTGGTGAAATAGTGGAGACTCTACCAAGATCCTTTCAGGTACATAGTAAAATATGCATGGAATTGATGAGAATATTGGATGATATCATGAGGATATTTCCAGATATAGAGGATGCAAGACCAAAATGTTCATCAGGAATAGAATCTCTGGTTTATCTGAACAACTCAATTCAGAAAGCTAAACTACTTCTACAACATTGCTCTGAATGTAGCAAACTCTACCTGGCAGTGACAGGAGATACAGTACTTTTAAGATGCCAAAAAGCAAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTTGTGTTGGCTGTTGAGGTTTCTAGAATAGTTGATGATCTTGAGCGTGCTACATTTGTTCTGGACTCTGCTGAAGAAGAGGCTGGGAAAGTTTTAACAGAATTGCTTCAGCAAGGTACTTCGAACTTGGTTTCAGCGGAAGATTTTGAACTTAAAGCTCTTCAGTTTGCAGCACCGGGGCTGAATATAACATCACAAAAGGCCTTATTAATCGAGGGACGGTCTATTAAAAATTTGCTAGATAAAATTGGACCAAATGACCAGAAAAAGAAATCGATCTTGAGATATCTTATGTATCTATTGAAAAAACATGGAAAATCCATGGTGGTGGGAGAACACATGGAGAAGGTTTATTCTCGTAGCAAAGAACCGACTGCAGAGGATAATAACTCTAATTGCCATTCGCTACGAAGCAATCGTGTTGAGCTGGATCCTAACTCGGAATATGATCAGTGTAGAACTCACATGAGTGAGTTGGATACAGGGATACCACCCGAGGAATATAAGTGTCCAATATCCTCAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAACAAAGTGGTTTAATGAGGGTAAAACTACATGTCCAAAAACAGAAAATGAACTACCTCATATGACATTGACTCCAAATGTTGCCATGAAGGACTTAATATCAAAGTGGTGCAAGAATAGTGGTGTTTCCATTCCTGATCCAAGCAGACACGCAGAAGATTTTCAGTTGTTGGATGCTTCAATCACCTCCATTAAGAGTTTAGGAAGTTATTTCAATGATTTGAACTTGCCACTGGATCTTAGTATCATGTCACTTGGATCATTGGATACTAGTTTTACTTCAGATGCGTCACGAGGTAAGACCAATCATGACTTGAATTTGATGATGAGCAAGGCTAGTGAAGACTCTCACAAGCATAGAGATCATGCACCAGAGATACATGATACAGATTTGATGCTCTTGCCTAAACTTCATGATCTTCAATGGGATTCTCAATGTAAGGTCATTGAAGATTTGAAAGATCGTTTGAAAAGCAATAGCCAAGCTATTTTGTCTGTGTCAGCTGAAAAATTAGTTGAACCACTAGTCAAATTTTTGAGCAATGCAAATGATCTGCAGGACGAAAAAGCGCTGAGATCTGGAACTCAGCTTCTGTTGGAATTTGTGAATAGCTGCAGAAATGGTATGGATAATTTAAGTGAAGATACATTCATCATGTTGGCAAGTCTTCTTAATTCAGAAGTGATAGGAGAAGTACTTGCCATAATGGAAGAACTATCTGGAAATAGCAAATCCAAAATTGAAGCATCAAGTGCACTCACTTCTGTCTTAAAATTACTTGATTCTGATAACAGAGGGTTCCAACAACAAGCTATAAGAATATTATACAATTTTTCCTTCAATAGTGAAGTTTGTCTGCACATGTTATCGCACAATTGCATCCAGAAATTGCTTCCATTTTTCAAAGATAGAGCCGTCTTGAGATACTGCATATACATATTGAAAAACATATGTGACACAGAAGAGGGTAGAAATTCAATTGCAGAAACAAAGGGATGCATAGCTTCTATTGCTGAAATACTTGAGACTGGAAGTAATGAGGAGCAAGAACATGCACTTTCTGTTCTTCTATCTCTATGTTCATGCTCTAAAAGTGTGGATTATTGTAAGTTGATTTTGGATGAAGAGATTATTGCTCCTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAAGAAAGTGCCGTGGAATTGCTTCATCTTTTGCGAGATGCAGAGTATGTTGAGAATGAGAATAACAGGCCCTCTCAACCAATTACCAACAACACTTTTGAAGATTCCAACAGTCACACAGAAGAAAATAGAACAACAAAAAGATCAAAATTTCTGAAGAAACTAGGATTGTTCTCAAAGCCTAGTTCACATGCATTAAAAACCAAAAGGTGA 2298 0.3734 MRTTSGEIVETLPRSFQVHSKICMELMRILDDIMRIFPDIEDARPKCSSGIESLVYLNNSIQKAKLLLQHCSECSKLYLAVTGDTVLLRCQKAKKSLEQSLIPIQGMVPVVLAVEVSRIVDDLERATFVLDSAEEEAGKVLTELLQQGTSNLVSAEDFELKALQFAAPGLNITSQKALLIEGRSIKNLLDKIGPNDQKKKSILRYLMYLLKKHGKSMVVGEHMEKVYSRSKEPTAEDNNSNCHSLRSNRVELDPNSEYDQCRTHMSELDTGIPPEEYKCPISSRLMYDPVIIASGVTYERMWITKWFNEGKTTCPKTENELPHMTLTPNVAMKDLISKWCKNSGVSIPDPSRHAEDFQLLDASITSIKSLGSYFNDLNLPLDLSIMSLGSLDTSFTSDASRGKTNHDLNLMMSKASEDSHKHRDHAPEIHDTDLMLLPKLHDLQWDSQCKVIEDLKDRLKSNSQAILSVSAEKLVEPLVKFLSNANDLQDEKALRSGTQLLLEFVNSCRNGMDNLSEDTFIMLASLLNSEVIGEVLAIMEELSGNSKSKIEASSALTSVLKLLDSDNRGFQQQAIRILYNFSFNSEVCLHMLSHNCIQKLLPFFKDRAVLRYCIYILKNICDTEEGRNSIAETKGCIASIAEILETGSNEEQEHALSVLLSLCSCSKSVDYCKLILDEEIIAPLFYISQNGNDKGKESAVELLHLLRDAEYVENENNRPSQPITNNTFEDSNSHTEENRTTKRSKFLKKLGLFSKPSSHALKTKR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06795 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Vifa1g06795 765 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Vifa1g06795 765 MobiDBLite consensus disorder prediction 714 742 - -
Vifa1g06795 765 Pfam U-box domain 274 342 IPR003613 GO:0004842|GO:0016567
Vifa1g06795 765 MobiDBLite consensus disorder prediction 715 731 - -
Vifa1g06795 765 CDD RING-Ubox_PUB 274 326 IPR045210 -
Vifa1g06795 765 PANTHER U BOX DOMAIN-CONTAINING 21 710 - -
Vifa1g06795 765 Pfam Armadillo-like 482 623 IPR006911 -
Vifa1g06795 765 Gene3D - 435 738 IPR011989 -
Vifa1g06795 765 SUPERFAMILY ARM repeat 436 706 IPR016024 -
Vifa1g06795 765 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Vifa1g06795 765 SUPERFAMILY RING/U-box 267 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06795 Vifa-Chr1 1047949653 1047952686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06795 9 753 U-box Gene Family AT4G36550 36.767 6.65e-132 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06795 - - psat:127120233 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06795 1 1047949653 1047952686 Vifa1g06795 1 1047949653 1047952686 ECH
Vifa4g02444 4 736288035 736290885 Vifa1g06795 1 1047949653 1047952686 ECH
Vifa1g06795 1 1047949653 1047952686 Vifa4g02444 4 736288035 736290885 PCT