Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06794 ATGTCGTTGAGAAGTATAGTAAGGGAACTCAAAGAAATGAGGGATGGGATTGGTAATACTTCGAGGCGAGGTGTAGGAAGTAGGCATTCACAGCGTCGGACGAAGTCACACATTGTTCCTGATATCACTTTAACATCACTTGAACCTATTCAGCAAGGACAATGGGCAAATATACCATCTGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCGGTTGTCGTTTCTTGTGCTTCCGTGTGTAAATCATGGAGGGCTGTTACCAAAGAGATTGTCCAGACTCCCGAGCAGTGTGGAAGGTTGACATTTCCTATTTCGCTAAAGCAGCCGGGTCCTCGTGACTCTCCGATTCAGTGCTTCATTCGGAGGGACCGAGAAACTTCTGCATATCTATTGTACTATGGATTGGTGCCATCTGAAAATGAGACTGATAAGCTGCTACTAGCTGCCAAAAAGATAAGGAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCCGACGATTTTTCTCGGACCAGCAATGCCTACGTTGGAAAACTCAGGTCTAATTTTTTGGGCACCAAGTTCACTATATATGATAGCCAACCTCCACATGGAGCTGGAATTCAACCAAATAGTCGGTCCAGTAGGAGATTCCATTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCTAGAAGAATGAACTGCATCATGACCTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCCGCACCAGCACCGAAAGGTAAAGGTCCAATTGGAGATTTAAGCAATTCAACCTTCTTAGAGATGCCGCCGGTGCAGAGCCAAGGCCCTATTGATTCTCTGGTACTTAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCGGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCCGCCGCAGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAAATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1248 0.4511 MSLRSIVRELKEMRDGIGNTSRRGVGSRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRTSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSKQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMTSIPVSAVQEGGNAPTPTSFPQITDEHFCSAPAPKGKGPIGDLSNSTFLEMPPVQSQGPIDSLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06794 415 Gene3D Tubby Protein; Chain A 113 415 IPR025659 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Vifa1g06794 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Vifa1g06794 415 PANTHER TUBBY-RELATED 48 413 - -
Vifa1g06794 415 Gene3D - 48 104 - -
Vifa1g06794 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Vifa1g06794 415 CDD F-box_AtTLP-like 55 99 - -
Vifa1g06794 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Vifa1g06794 415 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Vifa1g06794 415 Pfam Tub family 116 410 IPR000007 -
Vifa1g06794 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Vifa1g06794 415 Pfam F-box domain 55 102 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06794 Vifa-Chr1 1047945498 1047948296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06794 1 415 TUB Transcription Factor Family AT2G18280 63.942 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa1g06794 Tub 1.4e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06794 K19600 - gmx:100798958 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06794 1 1047945498 1047948296 Vifa1g06794 1 1047945498 1047948296 ECH
Vifa4g02441 4 736041496 736043021 Vifa1g06794 1 1047945498 1047948296 ECH
Vifa1g06794 1 1047945498 1047948296 Vifa4g02441 4 736041496 736043021 PCT