Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06793 ATGGCTAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTGGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCTGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAGTAATGCTTTCAGATCTTTTTTGGCTAGTGGGATCATTAGTAATCTGAACTCTCCGGCTGGTCTGAATGGACACGGATTTTCTCCATCCGGATTACTTCAGTTGGGCCAATCACAAAGTTTAAACAATTCTTCTGGTGATCAATTTAAATTCCAGTCGGCCATAACTCTCGTTAATCAGAATATTCTTCAGGGTATGCCAATGTCTATAGGATACGATCACTTGCAAAACAGCAAAGGAAGCAATTCAAGACACATTGAGCAGGAAAAAGAAGCTAAGAAGGGATCATTCAGAAAATATCTTGAATCAAGTGGAGTTGTTGATGCTCTAACCAAAGTTCTTGTTGCCTTGTATGAGCAAAACGACAAACCTTCTTCTGCTCTTGAGTTCATTCAACAGAATTTAAGTTGCCCTTCAAATTCCGGTTCTTCTCACTACTACTGA 582 0.4003 MASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHSNAFRSFLASGIISNLNSPAGLNGHGFSPSGLLQLGQSQSLNNSSGDQFKFQSAITLVNQNILQGMPMSIGYDHLQNSKGSNSRHIEQEKEAKKGSFRKYLESSGVVDALTKVLVALYEQNDKPSSALEFIQQNLSCPSNSGSSHYY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06793 193 PRINTS C-Myc-binding protein signature 161 175 - -
Vifa1g06793 193 PRINTS C-Myc-binding protein signature 147 161 - -
Vifa1g06793 193 PRINTS C-Myc-binding protein signature 137 147 - -
Vifa1g06793 193 PANTHER ASSOCIATE OF C-MYC AMY-1 136 187 IPR026060 GO:0003713|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06793 Vifa-Chr1 1047777269 1047778324 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06793 1 136 Response Regulator Gene Family AT2G25180 36.943 8.71e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06793 - K14491 gmx:100777171 152.525