Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06792 ATGGTAATGGATGATTCCACTGATCTCCTTCCCATCGGAATGCGTGTTCTTGCCGTCGACGACGACCCCACTTGCCTCAAAGTCTTGGAAACTCTCCTCCGAAGATGTGAATACCATGTTACCACAACTAGTCAAGCTATAATGGCATTGAATATGCTGAGAGAAAACAAAGACAAGTTTGACTTGGTTATCAGTGATGTGCATATACCAGATATGGATGGATTTAAGCTGCTTGAACTCGTGGGGCTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCGTATGGTGATACGAAGCTGGCGATGAAGGGGATTTCTCATGGTGCTTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGTTAAAGAATATTTGGCAGCATGTGATTAGGAAGAAGAAATCTGATTCAAAGGGGAAAAACAAAACCAATAAGCCAGATAACGCTACTTCTGATAGTTGCAGCGGACTGAGATCAGCGGGAACTGAGAATTCAGATGAAAATGGAAGGCTGGCTAAGAAAAGGAAGGATCAGGATGAAGATGAAGATGAGGTTAAAGAGAATGGTAACGATAATGAAGACCCATCAGCTCAGAAGAAGCCCCGAGTTGTTTGGTCTGTGGAGTTGCACCGCAAGTTTGTCGCTGCTGTAAATCACCTAGGCATTGACAAGGCTGTACCCAAAAAATTCTTGATATGA 699 0.4349 MVMDDSTDLLPIGMRVLAVDDDPTCLKVLETLLRRCEYHVTTTSQAIMALNMLRENKDKFDLVISDVHIPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLAMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDSKGKNKTNKPDNATSDSCSGLRSAGTENSDENGRLAKKRKDQDEDEDEVKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNHLGIDKAVPKKFLI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06792 232 CDD REC_typeB_ARR-like 16 130 - -
Vifa1g06792 232 PIRSF RR_ARR_type-B 1 231 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifa1g06792 232 SUPERFAMILY Homeodomain-like 198 230 IPR009057 -
Vifa1g06792 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 220 IPR045279 GO:0009736
Vifa1g06792 232 MobiDBLite consensus disorder prediction 133 201 - -
Vifa1g06792 232 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 229 IPR006447 GO:0003677
Vifa1g06792 232 SUPERFAMILY CheY-like 13 134 IPR011006 -
Vifa1g06792 232 SMART REC_2 14 126 IPR001789 GO:0000160
Vifa1g06792 232 MobiDBLite consensus disorder prediction 167 182 - -
Vifa1g06792 232 MobiDBLite consensus disorder prediction 146 166 - -
Vifa1g06792 232 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Vifa1g06792 232 Gene3D - 13 150 - -
Vifa1g06792 232 Gene3D - 196 232 - -
Vifa1g06792 232 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06792 Vifa-Chr1 1047776541 1047777239 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06792 8 231 Response Regulator Gene Family AT4G31920 64.286 9.50e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g06792 Response_reg 4.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06792 K14491 - gmx:100809002 361.303