Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06781 ATGAATGATAAAGTTGAATCCTTTCAGAATTTTACTCATTTCTTGAATCTTTCCGAAAAAGGGGTTTTGAGAAACGTTGCAAAGATGAATGACTTGATGACAAAAAGTTTCCTAAGTTATGTAGAATTGAAGAAACAGGCACAGAAGGATTTTCAACAAGATCCTGACATTGAACTAGGGAACCTCAACCCAACACAAGACCCTAACCTCTCTCAATTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTGTCAGATCTTCAACAACTGAATGAAGAGACTAAATCAACTCACAGTGCGAAAGTTTTACGCGGGCTGAGAGACCGAATGGATTCCGATATGGTTGCCGTGCTTCGCAAGGCGAATGTGATCAAGGCAAGGTTAGAGGCTCTTCAGAAATCAAATATCGTGAATCGAAGCATGTCAGAATGCTACAGAAAAGGAAGTCCTGTTGATAGAACAAGAATGTCTGTCACAAGTGGTTTGAAGGTCAAGCTTAGGGACATGATGAATGATTTTCAGTCCTTAAGGGACAAGATTGTGTTGGATCATAAGGAAGATTTGAAGAGAAGGTACTATACTGTAACGGGCGAGGTTCCTAGCAATGAGGTTATGGAGAAGATGATATCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACGGATGCTGATATGGGGACTCAGGTTAGGCACGAGGCGGTGATGGATATTCAGAGGAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGCTATTTTGGTTGAGACTCAAGGAGAAAAAATGGATAACATTGAAGATAATGTGGTGAATGCTGGTCACTACATTCATGGTGGAACTAATAATCTTTATTATGCAAGCCAGATGAAGAAGAGGAACAGGAAATGGATCTGTTGGGTAATAGCTGTTTTGTTGATTGTAGTGCTGGTGTGTATCATTGCAACGGTGTCTTCTTGA 981 0.4027 MNDKVESFQNFTHFLNLSEKGVLRNVAKMNDLMTKSFLSYVELKKQAQKDFQQDPDIELGNLNPTQDPNLSQFFQEVEAIKVEMEEITNLLSDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKANVIKARLEALQKSNIVNRSMSECYRKGSPVDRTRMSVTSGLKVKLRDMMNDFQSLRDKIVLDHKEDLKRRYYTVTGEVPSNEVMEKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKMDNIEDNVVNAGHYIHGGTNNLYYASQMKKRNRKWICWVIAVLLIVVLVCIIATVSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06781 326 Pfam Syntaxin 72 267 IPR006011 GO:0016020
Vifa1g06781 326 CDD SNARE_syntaxin1-like 236 291 - -
Vifa1g06781 326 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 67 198 - -
Vifa1g06781 326 Pfam SNARE domain 269 318 IPR000727 -
Vifa1g06781 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 232 294 IPR000727 -
Vifa1g06781 326 PANTHER SYNTAXIN 69 314 IPR045242 -
Vifa1g06781 326 SUPERFAMILY t-snare proteins 67 287 IPR010989 GO:0016020|GO:0016192
Vifa1g06781 326 FunFam Syntaxin 132 227 325 - -
Vifa1g06781 326 Gene3D - 65 198 - -
Vifa1g06781 326 CDD SynN 70 220 IPR006011 GO:0016020
Vifa1g06781 326 SMART tSNARE_6 227 294 IPR000727 -
Vifa1g06781 326 Coils Coil 77 104 - -
Vifa1g06781 326 Gene3D - 228 325 - -
Vifa1g06781 326 SMART SynN_4 65 192 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06781 Vifa-Chr1 1046934401 1046935936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06781 29 326 SNARE and Associated Proteins AT2G18260 57.003 1.33e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06781 K08486 - gmx:112997615 470.7