Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06777 | ATGGTTGATGATTCACCTTCTTCACCTTCACCTTCATCTCCACCACAATCATTGACTTGTTCAAGTGATGAAGAAAAGAGAGGAAAGAAAAGAGAAAGAGATAGTAACAAAAACACAAACACTAATCACCCAGTTTACAGAGGAGTCAGAATGCGAGCATGGGGAAAATGGGTTTCTGAAATCAGAGAACCAAAGAAGAAAAACCGAATCTGGCTTGGAACATTCCAAACAGCCGAAATGGCGGCGCGTGCACACGACGCAGCAGCACTAACCTTAAAAGGCTCATCCGCATTCCTTAACTTCCCCGAACTCTCAGCTTCACTTCCTAAACCACCTTCCAACTCACCAAAAGATGTTCAAGCCGCCGCCGCCAGAGCCGCTCTTATGGTCCCTCCACCGCCTCTCTCACCGGAACCTTCTTCCTCCTCCACATCCTCCTCATCTTTATCATCTTCTCATTCGATGCCGGAAGATCTCGTTGAGATTGTTGAACTACCGCGACTAGGAACATGTTTTGAAACACTTGACCCCAGTAACGAGTTAGTGTTTTTTGACTCACTTGATTATTCAGAATCATGGTATCATGGCATTTATGACGATCAAGAAGAGAATGGTTATGGTAGTGGATGCAACTTCAACATGATATCAATGCATGACCCAGAAAACACGGTTCTTTCATTGTGGTCTTGA | 690 | 0.4464 | MVDDSPSSPSPSSPPQSLTCSSDEEKRGKKRERDSNKNTNTNHPVYRGVRMRAWGKWVSEIREPKKKNRIWLGTFQTAEMAARAHDAAALTLKGSSAFLNFPELSASLPKPPSNSPKDVQAAAARAALMVPPPPLSPEPSSSSTSSSSLSSSHSMPEDLVEIVELPRLGTCFETLDPSNELVFFDSLDYSESWYHGIYDDQEENGYGSGCNFNMISMHDPENTVLSLWS | 229 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06777 | 229 | CDD | AP2 | 46 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | Gene3D | AP2/ERF domain | 45 | 103 | IPR036955 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 25 | 170 | - | - | |
Vifa1g06777 | 229 | PRINTS | Ethylene responsive element binding protein signature | 46 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | SMART | rav1_2 | 45 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | SUPERFAMILY | DNA-binding domain | 45 | 102 | IPR016177 | GO:0003677 | |
Vifa1g06777 | 229 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | MobiDBLite | consensus disorder prediction | 22 | 38 | - | - | |
Vifa1g06777 | 229 | MobiDBLite | consensus disorder prediction | 130 | 153 | - | - | |
Vifa1g06777 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g06777 | 229 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Vifa1g06777 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 44 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06777 | Vifa-Chr1 | 1046312075 | 1046312764 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06777 | 11 | 214 | AP2-EREBP Transcription Factor Family | AT5G11590 | 50.230 | 7.67e-54 | 171 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vifa1g06777 | AP2 | 1.2e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06777 | K09286 | - | gmx:100804801 | 203.756 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g06777 | 1 | 1046312075 | 1046312764 | Vifa1g06777 | 1 | 1046312075 | 1046312764 | ECH | |
Vifa1g06777 | 1 | 1046312075 | 1046312764 | Vifa1g06777 | 1 | 1046312075 | 1046312764 | PCT |