Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06777 ATGGTTGATGATTCACCTTCTTCACCTTCACCTTCATCTCCACCACAATCATTGACTTGTTCAAGTGATGAAGAAAAGAGAGGAAAGAAAAGAGAAAGAGATAGTAACAAAAACACAAACACTAATCACCCAGTTTACAGAGGAGTCAGAATGCGAGCATGGGGAAAATGGGTTTCTGAAATCAGAGAACCAAAGAAGAAAAACCGAATCTGGCTTGGAACATTCCAAACAGCCGAAATGGCGGCGCGTGCACACGACGCAGCAGCACTAACCTTAAAAGGCTCATCCGCATTCCTTAACTTCCCCGAACTCTCAGCTTCACTTCCTAAACCACCTTCCAACTCACCAAAAGATGTTCAAGCCGCCGCCGCCAGAGCCGCTCTTATGGTCCCTCCACCGCCTCTCTCACCGGAACCTTCTTCCTCCTCCACATCCTCCTCATCTTTATCATCTTCTCATTCGATGCCGGAAGATCTCGTTGAGATTGTTGAACTACCGCGACTAGGAACATGTTTTGAAACACTTGACCCCAGTAACGAGTTAGTGTTTTTTGACTCACTTGATTATTCAGAATCATGGTATCATGGCATTTATGACGATCAAGAAGAGAATGGTTATGGTAGTGGATGCAACTTCAACATGATATCAATGCATGACCCAGAAAACACGGTTCTTTCATTGTGGTCTTGA 690 0.4464 MVDDSPSSPSPSSPPQSLTCSSDEEKRGKKRERDSNKNTNTNHPVYRGVRMRAWGKWVSEIREPKKKNRIWLGTFQTAEMAARAHDAAALTLKGSSAFLNFPELSASLPKPPSNSPKDVQAAAARAALMVPPPPLSPEPSSSSTSSSSLSSSHSMPEDLVEIVELPRLGTCFETLDPSNELVFFDSLDYSESWYHGIYDDQEENGYGSGCNFNMISMHDPENTVLSLWS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06777 229 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vifa1g06777 229 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vifa1g06777 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 170 - -
Vifa1g06777 229 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vifa1g06777 229 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vifa1g06777 229 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vifa1g06777 229 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Vifa1g06777 229 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vifa1g06777 229 MobiDBLite consensus disorder prediction 22 38 - -
Vifa1g06777 229 MobiDBLite consensus disorder prediction 130 153 - -
Vifa1g06777 229 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vifa1g06777 229 MobiDBLite consensus disorder prediction 1 46 - -
Vifa1g06777 229 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06777 Vifa-Chr1 1046312075 1046312764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06777 11 214 AP2-EREBP Transcription Factor Family AT5G11590 50.230 7.67e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g06777 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06777 K09286 - gmx:100804801 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06777 1 1046312075 1046312764 Vifa1g06777 1 1046312075 1046312764 ECH
Vifa1g06777 1 1046312075 1046312764 Vifa1g06777 1 1046312075 1046312764 PCT