Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06771 ATGGAGAAGACGCGACTAGATAACTTATTTCCTCTGACTCCAAGTTCAATATTCTCGACCAAGAAGGGACGCAGTGGATACGAGCCATCAGACACGGAGACGGAGTGGCAAGACACTCCGCGTCATGAACGAGGTAGAAAGAACACGAATATGAGTCCTGAAGAAACAAAAGCTATGTCTCAGAGTAACAAAAGTCCAATGATACTCCACAAGAGACACCCTTCAAAATTTGAATTTGAAGTCTTGTCGTCACCTTCAATAACAGGTTCAGTTCTTAACCAACCAAGAAGACGACATCTCAGCAAATCACCCTATAAGATACGTATAGCACGAGATGATGGTAATGATGATGACGATGCTTCGTTATCATACATGTCTGGTTTAAACTCAAGTAGAAATATTAGTCCTTTGCCGAGATCAGACTTTGGAAGAACAGTGTCTCCTTATAACAGAAATCATCAGCAAAGAACACCTTCTAATGAAAACAGGAAAGCGAATTCAGGGCTTCTGGAAGTGGATAGAGTGAGTACAAAACCAAACTATAGGAGAGCGGTGACTGCTCCAAGATTGAGAGAACCACAACAAACATTGCAAAACACGGTGAGGATTCTGAAACAAAGGGAAAAATCTCCCTTCAAAACAGGTTCAGTTAGAGAAAGAGAAGTCAATGAAATGATAGCACAGGTGAAGATATCGAAAAATGATCCTACCGATGATTATTCATCGGCACTAGAAAGTACAGATTCAATTCAACCAGGTGATCTTTTCTTTTCCCGCGAATGCAATGCCTTGCAAGCCAAGAATCCTTCATTGCCTAAAAAAGTTGAACAATACGGGTATTTTAGTCCGAGACCAGTGATCACTACCATTAACAACCCATCTGAAAGTGGTAAATTCAATACGAATACGAATATGAATAAGCCAAGAACCTCTTCAAGTAATGCATTGTTATCTCGAACAACGATGGGACCATCAATCAGAAAGGGAAGTGGAACTGGAAAGTCTAGCGCTAAATCCAGCGTAAAAAGTGATGCTAGCACAAAGACAACCGAAAGCATGAGGAAATTCACATCCAACAGAAAAAAGAGCCAGAAAGATGCATGGTTTGCCTGCATGATGAGAACAGGAAACTGTAGAACTTCAAGAAAATCACCTGAACGTAGACCAATCGACGAGGCTTCGTTGATTGAGAGGGCAACAATTGTGGAAAGCATTCCACAATTATGGGCTGATAAACATCAACCAGCTTCACTCAATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAACTAGTGTCACAAGGCTCTTGCCCTCACATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGATCTAGCAATGGCTTTTCTTAGAGAAGCATACGGTGATTCATGTTGTAAACTGTCACATGATCTAAGACATTTCCCTATTCAGGACAAAAGGACTGTGAAAGTATCGGTTTCAATCACATCGAGTCCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCCAAATATGCTTTGATGGGATTAATCAAAGAAATTAGCAATATATATGCAATTGCCCCTGAAGTAAGCAATGTCAATTTCAAGTCAAATTATAAAGTAATAATTCTTTACGGGGTCGACAAAGCTGTAGAGAACATTCAACACTTGATCAAATGGATCATAGACCGATATTCAGATATATGCAAATTAGTTCTATGCTGTGAAGATGATGAAAATATTATTGCACCTGTGAAAAACCGGTTCAAAGTTATCAATGTTGATGCTCCTCAAACTCATGAAATAGCAAATAAAGAAGAAATTGATCTATCCATGAGTTTTGCCATGAAGATTGCTACAAAAGCTAAGCAGAACCTCAGGGAAGCAATATTGGCTCTTGAAGCCTGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCGATTCCAGTTGGATGGGAGAAGATTGTAATAGAACTTGCTGTAGAGATTCTAACCGATCCATCATTTTCACGCTTACTCTCAATAAGAGGGAAATTTCAAATGCTTCTCCTGGACTTTGTCCACCCGAAATTGATTCTCCTGAAACTTGTGGAAGAGCTCCTAAGAAGAGTTGAGACCGGAGTAAAAAGGGAGCTCTACTACTGGCATGCTTATTATGATAGAAGACTTCCACCAGGAACAACAGCTTTACTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATGTGTAGAAAAAGCTCAGGAAGTAGACAATATGTGTAG 2271 0.3994 MEKTRLDNLFPLTPSSIFSTKKGRSGYEPSDTETEWQDTPRHERGRKNTNMSPEETKAMSQSNKSPMILHKRHPSKFEFEVLSSPSITGSVLNQPRRRHLSKSPYKIRIARDDGNDDDDASLSYMSGLNSSRNISPLPRSDFGRTVSPYNRNHQQRTPSNENRKANSGLLEVDRVSTKPNYRRAVTAPRLREPQQTLQNTVRILKQREKSPFKTGSVREREVNEMIAQVKISKNDPTDDYSSALESTDSIQPGDLFFSRECNALQAKNPSLPKKVEQYGYFSPRPVITTINNPSESGKFNTNTNMNKPRTSSSNALLSRTTMGPSIRKGSGTGKSSAKSSVKSDASTKTTESMRKFTSNRKKSQKDAWFACMMRTGNCRTSRKSPERRPIDEASLIERATIVESIPQLWADKHQPASLNGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREAYGDSCCKLSHDLRHFPIQDKRTVKVSVSITSSPHHMELNVNSEPNAKYALMGLIKEISNIYAIAPEVSNVNFKSNYKVIILYGVDKAVENIQHLIKWIIDRYSDICKLVLCCEDDENIIAPVKNRFKVINVDAPQTHEIANKEEIDLSMSFAMKIATKAKQNLREAILALEACKAHNYPFSEEQPIPVGWEKIVIELAVEILTDPSFSRLLSIRGKFQMLLLDFVHPKLILLKLVEELLRRVETGVKRELYYWHAYYDRRLPPGTTALLKLEEFVAKFMSMCRKSSGSRQYV 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06771 756 MobiDBLite consensus disorder prediction 289 361 - -
Vifa1g06771 756 Gene3D - 600 650 - -
Vifa1g06771 756 SUPERFAMILY post-AAA+ oligomerization domain-like 653 745 IPR008921 GO:0003677|GO:0006260
Vifa1g06771 756 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 409 735 - -
Vifa1g06771 756 MobiDBLite consensus disorder prediction 9 25 - -
Vifa1g06771 756 Gene3D - 653 746 - -
Vifa1g06771 756 MobiDBLite consensus disorder prediction 131 166 - -
Vifa1g06771 756 FunFam Replication factor C subunit 3 407 598 - -
Vifa1g06771 756 MobiDBLite consensus disorder prediction 131 169 - -
Vifa1g06771 756 MobiDBLite consensus disorder prediction 1 63 - -
Vifa1g06771 756 MobiDBLite consensus disorder prediction 289 353 - -
Vifa1g06771 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 637 IPR027417 -
Vifa1g06771 756 Gene3D - 407 598 IPR027417 -
Vifa1g06771 756 MobiDBLite consensus disorder prediction 26 51 - -
Vifa1g06771 756 FunFam replication factor C subunit 3 601 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06771 Vifa-Chr1 1045903230 1045906497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06771 408 745 Core DNA Replication Machinery Family AT5G27740 37.356 6.25e-73 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06771 K10756 - gmx:100795321 958.747